Analysis of interatomic Contacts of Structural Units in PDB entry:
9F98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F98 entry

There are 4 chains in PDB entry 9F98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 259ALA 461
B
 LEU 249PRO 447
C
 PRO 259ALA 461
D
 LEU 249ALA 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9F98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
284 294Right-handed alpha
Helix 2
AA2
A
337 346Right-handed alpha
Helix 3
AA3
A
348 358Right-handed alpha
Helix 4
AA4
A
380 394Right-handed alpha
Helix 5
AA5
A
404 423Right-handed alpha
Helix 6
AA6
A
455 460Right-handed alpha
Helix 7
AA7
B
257 263Right-handed alpha
Helix 8
AA8
B
265 276Right-handed alpha
Helix 9
AA9
B
318 328Right-handed alpha
Helix 10
AB1
B
343 354Right-handed alpha
Helix 11
AB2
B
405 419Right-handed alpha
Helix 12
AB3
B
428 446Right-handed alpha
Helix 13
AB4
C
276 279Right-handed 310
Helix 14
AB5
C
285 294Right-handed alpha
Helix 15
AB6
C
337 346Right-handed alpha
Helix 16
AB7
C
348 358Right-handed alpha
Helix 17
AB8
C
380 394Right-handed alpha
Helix 18
AB9
C
404 424Right-handed alpha
Helix 19
AC1
C
455 461Right-handed alpha
Helix 20
AC2
D
257 262Right-handed alpha
Helix 21
AC3
D
265 276Right-handed alpha
Helix 22
AC4
D
318 328Right-handed alpha
Helix 23
AC5
D
343 354Right-handed alpha
Helix 24
AC6
D
405 419Right-handed alpha
Helix 25
AC7
D
428 446Right-handed alpha
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There are 7 sheets in PDB entry 9F98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
428 430anti-parallel
Strand 3
A
452 453parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
267 274parallel
Strand 3
A
308 314anti-parallel
Strand 4
A
325 336anti-parallel
Strand 5
A
363 369parallel
Strand 6
A
398 402parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
252 256parallel
Strand 3
B
290 295anti-parallel
Strand 4
B
307 308anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
252 256parallel
Strand 3
B
290 295anti-parallel
Strand 4
B
311 317anti-parallel
Strand 5
B
358 364parallel
Strand 6
B
422 426parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
C
428 430anti-parallel
Strand 3
C
452 453parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 301first strand
Strand 2
C
267 274parallel
Strand 3
C
308 314anti-parallel
Strand 4
C
325 336anti-parallel
Strand 5
C
363 369parallel
Strand 6
C
398 402parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
279 282first strand
Strand 2
D
253 256parallel
Strand 3
D
290 294anti-parallel
Strand 4
D
311 317anti-parallel
Strand 5
D
358 364parallel
Strand 6
D
422 426parallel
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