Analysis of interatomic Contacts of Structural Units in PDB entry:
9F9N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F9N entry

There are 7 chains in PDB entry 9F9N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 266	ASP 627
B	LYS 266	ASP 627
C	LYS 266	ASP 627
D	LYS 266	ASP 627
E	LYS 266	ASP 627
F	LYS 266	ASP 627
S	T 1	T 8

There are148 helices in PDB entry 9F9N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	281	Right-handed alpha
Helix 2	AA2	A	284	295	Right-handed alpha
Helix 3	AA3	A	296	297	Right-handed 310
Helix 4	AA4	A	298	301	Right-handed 310
Helix 5	AA5	A	302	308	Right-handed alpha
Helix 6	AA6	A	310	315	Right-handed alpha
Helix 7	AA7	A	316	328	Right-handed alpha
Helix 8	AA8	A	332	355	Right-handed alpha
Helix 9	AA9	A	356	376	Right-handed alpha
Helix 10	AB1	A	383	395	Right-handed alpha
Helix 11	AB2	A	400	415	Right-handed alpha
Helix 12	AB3	A	431	444	Right-handed alpha
Helix 13	AB4	A	453	461	Right-handed alpha
Helix 14	AB5	A	462	465	Right-handed 310
Helix 15	AB6	A	477	484	Right-handed 310
Helix 16	AB7	A	489	495	Right-handed alpha
Helix 17	AB8	A	497	503	Right-handed alpha
Helix 18	AB9	A	534	539	Right-handed alpha
Helix 19	AC1	A	550	559	Right-handed alpha
Helix 20	AC2	A	561	566	Right-handed alpha
Helix 21	AC3	A	567	570	Right-handed 310
Helix 22	AC4	A	571	583	Right-handed alpha
Helix 23	AC5	A	584	588	Right-handed 310
Helix 24	AC6	A	592	605	Right-handed alpha
Helix 25	AC7	A	608	622	Right-handed alpha
Helix 26	AC8	B	269	281	Right-handed alpha
Helix 27	AC9	B	284	295	Right-handed alpha
Helix 28	AD1	B	296	297	Right-handed 310
Helix 29	AD2	B	298	301	Right-handed 310
Helix 30	AD3	B	302	308	Right-handed alpha
Helix 31	AD4	B	310	315	Right-handed alpha
Helix 32	AD5	B	316	330	Right-handed alpha
Helix 33	AD6	B	332	355	Right-handed alpha
Helix 34	AD7	B	356	376	Right-handed alpha
Helix 35	AD8	B	383	398	Right-handed alpha
Helix 36	AD9	B	400	415	Right-handed alpha
Helix 37	AE1	B	431	443	Right-handed alpha
Helix 38	AE2	B	455	462	Right-handed alpha
Helix 39	AE3	B	463	465	Right-handed 310
Helix 40	AE4	B	479	484	Right-handed 310
Helix 41	AE5	B	489	497	Right-handed alpha
Helix 42	AE6	B	497	503	Right-handed alpha
Helix 43	AE7	B	534	541	Right-handed alpha
Helix 44	AE8	B	550	560	Right-handed alpha
Helix 45	AE9	B	560	566	Right-handed alpha
Helix 46	AF1	B	567	570	Right-handed 310
Helix 47	AF2	B	571	583	Right-handed alpha
Helix 48	AF3	B	584	588	Right-handed 310
Helix 49	AF4	B	589	607	Right-handed alpha
Helix 50	AF5	B	608	622	Right-handed alpha
Helix 51	AF6	C	269	281	Right-handed alpha
Helix 52	AF7	C	284	295	Right-handed alpha
Helix 53	AF8	C	296	297	Right-handed 310
Helix 54	AF9	C	298	301	Right-handed 310
Helix 55	AG1	C	302	307	Right-handed alpha
Helix 56	AG2	C	310	315	Right-handed alpha
Helix 57	AG3	C	316	330	Right-handed alpha
Helix 58	AG4	C	332	355	Right-handed alpha
Helix 59	AG5	C	356	376	Right-handed alpha
Helix 60	AG6	C	383	398	Right-handed alpha
Helix 61	AG7	C	400	415	Right-handed alpha
Helix 62	AG8	C	431	444	Right-handed alpha
Helix 63	AG9	C	456	462	Right-handed alpha
Helix 64	AH1	C	463	465	Right-handed 310
Helix 65	AH2	C	479	484	Right-handed 310
Helix 66	AH3	C	489	497	Right-handed alpha
Helix 67	AH4	C	497	503	Right-handed alpha
Helix 68	AH5	C	534	541	Right-handed alpha
Helix 69	AH6	C	550	559	Right-handed alpha
Helix 70	AH7	C	561	566	Right-handed alpha
Helix 71	AH8	C	567	570	Right-handed 310
Helix 72	AH9	C	571	583	Right-handed alpha
Helix 73	AI1	C	584	588	Right-handed 310
Helix 74	AI2	C	589	591	Right-handed 310
Helix 75	AI3	C	592	607	Right-handed alpha
Helix 76	AI4	C	608	621	Right-handed alpha
Helix 77	AI5	D	269	281	Right-handed alpha
Helix 78	AI6	D	284	295	Right-handed alpha
Helix 79	AI7	D	296	297	Right-handed 310
Helix 80	AI8	D	298	301	Right-handed 310
Helix 81	AI9	D	302	307	Right-handed alpha
Helix 82	AJ1	D	310	315	Right-handed alpha
Helix 83	AJ2	D	316	330	Right-handed alpha
Helix 84	AJ3	D	332	355	Right-handed alpha
Helix 85	AJ4	D	356	376	Right-handed alpha
Helix 86	AJ5	D	383	398	Right-handed alpha
Helix 87	AJ6	D	400	415	Right-handed alpha
Helix 88	AJ7	D	431	444	Right-handed alpha
Helix 89	AJ8	D	456	463	Right-handed alpha
Helix 90	AJ9	D	479	484	Right-handed 310
Helix 91	AK1	D	489	496	Right-handed alpha
Helix 92	AK2	D	497	503	Right-handed alpha
Helix 93	AK3	D	534	539	Right-handed alpha
Helix 94	AK4	D	550	560	Right-handed alpha
Helix 95	AK5	D	561	566	Right-handed alpha
Helix 96	AK6	D	567	570	Right-handed 310
Helix 97	AK7	D	571	583	Right-handed alpha
Helix 98	AK8	D	584	588	Right-handed 310
Helix 99	AK9	D	589	607	Right-handed alpha
Helix 100	AL1	D	608	622	Right-handed alpha
Helix 101	AL2	E	269	281	Right-handed alpha
Helix 102	AL3	E	284	295	Right-handed alpha
Helix 103	AL4	E	296	297	Right-handed 310
Helix 104	AL5	E	298	301	Right-handed 310
Helix 105	AL6	E	302	307	Right-handed alpha
Helix 106	AL7	E	310	315	Right-handed alpha
Helix 107	AL8	E	316	330	Right-handed alpha
Helix 108	AL9	E	332	355	Right-handed alpha
Helix 109	AM1	E	356	376	Right-handed alpha
Helix 110	AM2	E	383	396	Right-handed alpha
Helix 111	AM3	E	400	415	Right-handed alpha
Helix 112	AM4	E	431	444	Right-handed alpha
Helix 113	AM5	E	456	462	Right-handed alpha
Helix 114	AM6	E	463	465	Right-handed 310
Helix 115	AM7	E	479	484	Right-handed 310
Helix 116	AM8	E	489	497	Right-handed alpha
Helix 117	AM9	E	497	503	Right-handed alpha
Helix 118	AN1	E	534	539	Right-handed alpha
Helix 119	AN2	E	550	559	Right-handed alpha
Helix 120	AN3	E	561	566	Right-handed alpha
Helix 121	AN4	E	571	583	Right-handed alpha
Helix 122	AN5	E	584	588	Right-handed 310
Helix 123	AN6	E	589	591	Right-handed 310
Helix 124	AN7	E	592	607	Right-handed alpha
Helix 125	AN8	E	608	622	Right-handed alpha
Helix 126	AN9	F	269	281	Right-handed alpha
Helix 127	AO1	F	284	295	Right-handed alpha
Helix 128	AO2	F	302	307	Right-handed alpha
Helix 129	AO3	F	310	315	Right-handed alpha
Helix 130	AO4	F	316	330	Right-handed alpha
Helix 131	AO5	F	332	355	Right-handed alpha
Helix 132	AO6	F	356	376	Right-handed alpha
Helix 133	AO7	F	383	398	Right-handed alpha
Helix 134	AO8	F	400	415	Right-handed alpha
Helix 135	AO9	F	431	444	Right-handed alpha
Helix 136	AP1	F	453	462	Right-handed alpha
Helix 137	AP2	F	463	465	Right-handed 310
Helix 138	AP3	F	479	484	Right-handed 310
Helix 139	AP4	F	489	497	Right-handed alpha
Helix 140	AP5	F	497	503	Right-handed alpha
Helix 141	AP6	F	534	539	Right-handed alpha
Helix 142	AP7	F	550	559	Right-handed alpha
Helix 143	AP8	F	560	566	Right-handed alpha
Helix 144	AP9	F	567	570	Right-handed 310
Helix 145	AQ1	F	571	583	Right-handed alpha
Helix 146	AQ2	F	584	588	Right-handed 310
Helix 147	AQ3	F	592	607	Right-handed alpha
Helix 148	AQ4	F	608	622	Right-handed alpha

There are 12 sheets in PDB entry 9F9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	448	first strand
Strand 2	A	470	472	parallel
Strand 3	A	524	527	parallel
Strand 4	A	421	425	parallel
Strand 5	A	541	546	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	517	519	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	448	first strand
Strand 2	B	469	472	parallel
Strand 3	B	524	528	parallel
Strand 4	B	421	425	parallel
Strand 5	B	543	546	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	511	first strand
Strand 2	B	514	519	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	448	first strand
Strand 2	C	469	472	parallel
Strand 3	C	524	528	parallel
Strand 4	C	421	425	parallel
Strand 5	C	543	546	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	511	first strand
Strand 2	C	514	519	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	448	first strand
Strand 2	D	469	472	parallel
Strand 3	D	524	528	parallel
Strand 4	D	421	425	parallel
Strand 5	D	541	546	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	509	first strand
Strand 2	D	517	519	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	446	448	first strand
Strand 2	E	470	472	parallel
Strand 3	E	524	528	parallel
Strand 4	E	421	425	parallel
Strand 5	E	541	546	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	509	first strand
Strand 2	E	517	519	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	448	first strand
Strand 2	F	470	472	parallel
Strand 3	F	524	528	parallel
Strand 4	F	421	425	parallel
Strand 5	F	541	546	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	507	510	first strand
Strand 2	F	516	519	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F9N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F9N