Analysis of interatomic Contacts of Structural Units in PDB entry:
9F9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9F9V entry

There are 2 chains in PDB entry 9F9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 368
B
 MET 1LEU 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9F9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
50 66Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
126 145Right-handed alpha
Helix 6
AA6
A
155 158Right-handed 310
Helix 7
AA7
A
159 166Right-handed alpha
Helix 8
AA8
A
171 191Right-handed alpha
Helix 9
AA9
A
215 222Right-handed 310
Helix 10
AB1
A
237 254Right-handed alpha
Helix 11
AB2
A
272 277Right-handed alpha
Helix 12
AB3
A
279 291Right-handed alpha
Helix 13
AB4
A
291 302Right-handed alpha
Helix 14
AB5
A
324 328Right-handed 310
Helix 15
AB6
B
22 33Right-handed alpha
Helix 16
AB7
B
50 66Right-handed alpha
Helix 17
AB8
B
84 88Right-handed 310
Helix 18
AB9
B
95 99Right-handed 310
Helix 19
AC1
B
126 145Right-handed alpha
Helix 20
AC2
B
155 158Right-handed 310
Helix 21
AC3
B
159 166Right-handed alpha
Helix 22
AC4
B
171 191Right-handed alpha
Helix 23
AC5
B
215 222Right-handed 310
Helix 24
AC6
B
237 254Right-handed alpha
Helix 25
AC7
B
272 277Right-handed alpha
Helix 26
AC8
B
279 291Right-handed alpha
Helix 27
AC9
B
291 302Right-handed alpha
Helix 28
AD1
B
324 328Right-handed 310
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There are 6 sheets in PDB entry 9F9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
35 38parallel
Strand 3
A
70 76parallel
Strand 4
A
148 152parallel
Strand 5
A
195 201parallel
Strand 6
A
224 227parallel
Strand 7
A
257 262parallel
Strand 8
A
306 310parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
117 121anti-parallel
Strand 3
A
112 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
352 357anti-parallel
Strand 4
A
362 367anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
35 38parallel
Strand 3
B
70 76parallel
Strand 4
B
148 152parallel
Strand 5
B
195 201parallel
Strand 6
B
224 227parallel
Strand 7
B
257 262parallel
Strand 8
B
306 310parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
117 121anti-parallel
Strand 3
B
112 114anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
344 349anti-parallel
Strand 3
B
352 357anti-parallel
Strand 4
B
362 367anti-parallel
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