Analysis of interatomic Contacts of Structural Units in PDB entry:
9F9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9F9Y entry

There are 3 chains in PDB entry 9F9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	SER 1122
B	GLN 14	SER 1122
C	GLN 14	SER 1122

There are 84 helices in PDB entry 9F9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	279	Right-handed alpha
Helix 2	AA2	A	312	318	Right-handed alpha
Helix 3	AA3	A	324	328	Right-handed 310
Helix 4	AA4	A	339	346	Right-handed 310
Helix 5	AA5	A	358	364	Right-handed 310
Helix 6	AA6	A	380	385	Right-handed 310
Helix 7	AA7	A	391	397	Right-handed alpha
Helix 8	AA8	A	413	418	Right-handed alpha
Helix 9	AA9	A	420	424	Right-handed 310
Helix 10	AB1	A	477	480	Right-handed 310
Helix 11	AB2	A	605	611	Right-handed alpha
Helix 12	AB3	A	612	615	Right-handed 310
Helix 13	AB4	A	712	719	Right-handed alpha
Helix 14	AB5	A	721	729	Right-handed alpha
Helix 15	AB6	A	730	732	Right-handed 310
Helix 16	AB7	A	733	758	Right-handed alpha
Helix 17	AB8	A	791	801	Right-handed alpha
Helix 18	AB9	A	825	830	Right-handed alpha
Helix 19	AC1	A	841	860	Right-handed alpha
Helix 20	AC2	A	861	865	Right-handed 310
Helix 21	AC3	A	872	884	Right-handed alpha
Helix 22	AC4	A	887	894	Right-handed alpha
Helix 23	AC5	A	894	916	Right-handed alpha
Helix 24	AC6	A	920	940	Right-handed alpha
Helix 25	AC7	A	941	943	Right-handed 310
Helix 26	AC8	A	951	959	Right-handed alpha
Helix 27	AC9	A	960	1008	Right-handed alpha
Helix 28	AD1	A	1115	1122	Right-handed alpha
Helix 29	AD2	B	269	279	Right-handed alpha
Helix 30	AD3	B	312	318	Right-handed alpha
Helix 31	AD4	B	324	328	Right-handed 310
Helix 32	AD5	B	339	346	Right-handed 310
Helix 33	AD6	B	358	364	Right-handed 310
Helix 34	AD7	B	380	385	Right-handed 310
Helix 35	AD8	B	391	397	Right-handed alpha
Helix 36	AD9	B	413	418	Right-handed alpha
Helix 37	AE1	B	420	424	Right-handed 310
Helix 38	AE2	B	477	480	Right-handed 310
Helix 39	AE3	B	605	611	Right-handed alpha
Helix 40	AE4	B	612	615	Right-handed 310
Helix 41	AE5	B	712	719	Right-handed alpha
Helix 42	AE6	B	721	729	Right-handed alpha
Helix 43	AE7	B	730	732	Right-handed 310
Helix 44	AE8	B	733	758	Right-handed alpha
Helix 45	AE9	B	791	801	Right-handed alpha
Helix 46	AF1	B	825	830	Right-handed alpha
Helix 47	AF2	B	841	860	Right-handed alpha
Helix 48	AF3	B	861	865	Right-handed 310
Helix 49	AF4	B	872	884	Right-handed alpha
Helix 50	AF5	B	887	894	Right-handed alpha
Helix 51	AF6	B	894	916	Right-handed alpha
Helix 52	AF7	B	920	940	Right-handed alpha
Helix 53	AF8	B	941	943	Right-handed 310
Helix 54	AF9	B	951	959	Right-handed alpha
Helix 55	AG1	B	960	1008	Right-handed alpha
Helix 56	AG2	B	1115	1122	Right-handed alpha
Helix 57	AG3	C	269	279	Right-handed alpha
Helix 58	AG4	C	312	318	Right-handed alpha
Helix 59	AG5	C	324	328	Right-handed 310
Helix 60	AG6	C	339	346	Right-handed 310
Helix 61	AG7	C	358	364	Right-handed 310
Helix 62	AG8	C	380	385	Right-handed 310
Helix 63	AG9	C	391	397	Right-handed alpha
Helix 64	AH1	C	413	418	Right-handed alpha
Helix 65	AH2	C	420	424	Right-handed 310
Helix 66	AH3	C	477	480	Right-handed 310
Helix 67	AH4	C	605	611	Right-handed alpha
Helix 68	AH5	C	612	615	Right-handed 310
Helix 69	AH6	C	712	719	Right-handed alpha
Helix 70	AH7	C	721	729	Right-handed alpha
Helix 71	AH8	C	730	732	Right-handed 310
Helix 72	AH9	C	733	758	Right-handed alpha
Helix 73	AI1	C	791	801	Right-handed alpha
Helix 74	AI2	C	825	830	Right-handed alpha
Helix 75	AI3	C	841	860	Right-handed alpha
Helix 76	AI4	C	861	865	Right-handed 310
Helix 77	AI5	C	872	884	Right-handed alpha
Helix 78	AI6	C	887	894	Right-handed alpha
Helix 79	AI7	C	894	916	Right-handed alpha
Helix 80	AI8	C	920	940	Right-handed alpha
Helix 81	AI9	C	941	943	Right-handed 310
Helix 82	AJ1	C	951	959	Right-handed alpha
Helix 83	AJ2	C	960	1008	Right-handed alpha
Helix 84	AJ3	C	1115	1122	Right-handed alpha

There are 48 sheets in PDB entry 9F9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	240	244	anti-parallel
Strand 4	A	75	80	anti-parallel
Strand 5	A	163	172	anti-parallel
Strand 6	A	175	184	anti-parallel
Strand 7	A	197	204	anti-parallel
Strand 8	A	24	25	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	43	first strand
Strand 2	A	246	254	anti-parallel
Strand 3	A	260	265	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	212	215	anti-parallel
Strand 3	A	90	93	anti-parallel
Strand 4	A	102	107	anti-parallel
Strand 5	A	112	115	anti-parallel
Strand 6	A	144	147	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	121	first strand
Strand 2	A	135	139	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	294	first strand
Strand 2	A	567	574	anti-parallel
Strand 3	A	584	588	anti-parallel
Strand 4	A	623	626	anti-parallel
Strand 5	A	617	620	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	513	518	parallel
Strand 3	A	521	529	anti-parallel
Strand 4	A	559	563	anti-parallel
Strand 5	A	548	552	anti-parallel
Strand 6	A	540	542	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	369	378	anti-parallel
Strand 3	A	482	491	anti-parallel
Strand 4	A	406	412	anti-parallel
Strand 5	A	351	355	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	499	500	parallel
Strand 3	A	366	367	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	467	469	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	463	464	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	630	first strand
Strand 2	A	667	671	parallel
Strand 3	A	645	649	anti-parallel
Strand 4	A	639	642	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	679	first strand
Strand 2	C	763	765	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	690	first strand
Strand 2	A	1047	1053	anti-parallel
Strand 3	A	1069	1072	anti-parallel
Strand 4	A	1077	1080	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	703	first strand
Strand 2	A	1034	1044	anti-parallel
Strand 3	A	1022	1031	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	711	first strand
Strand 2	A	833	836	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	765	first strand
Strand 2	B	677	679	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1095	1097	first strand
Strand 2	A	1061	1065	anti-parallel
Strand 3	A	1056	1058	anti-parallel
Strand 4	A	1108	1109	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	240	244	anti-parallel
Strand 4	B	75	80	anti-parallel
Strand 5	B	163	172	anti-parallel
Strand 6	B	175	184	anti-parallel
Strand 7	B	197	204	anti-parallel
Strand 8	B	24	25	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	43	first strand
Strand 2	B	246	254	anti-parallel
Strand 3	B	260	265	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	212	215	anti-parallel
Strand 3	B	90	93	anti-parallel
Strand 4	B	102	107	anti-parallel
Strand 5	B	112	115	anti-parallel
Strand 6	B	144	147	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	121	first strand
Strand 2	B	135	139	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	294	first strand
Strand 2	B	567	574	anti-parallel
Strand 3	B	584	588	anti-parallel
Strand 4	B	623	626	anti-parallel
Strand 5	B	617	620	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	303	first strand
Strand 2	B	513	518	parallel
Strand 3	B	521	529	anti-parallel
Strand 4	B	559	563	anti-parallel
Strand 5	B	548	552	anti-parallel
Strand 6	B	540	542	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	333	first strand
Strand 2	B	369	378	anti-parallel
Strand 3	B	482	491	anti-parallel
Strand 4	B	406	412	anti-parallel
Strand 5	B	351	355	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	499	500	parallel
Strand 3	B	366	367	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	429	first strand
Strand 2	B	467	469	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	463	464	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	630	first strand
Strand 2	B	667	671	parallel
Strand 3	B	645	649	anti-parallel
Strand 4	B	639	642	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	690	first strand
Strand 2	B	1047	1053	anti-parallel
Strand 3	B	1069	1072	anti-parallel
Strand 4	B	1077	1080	anti-parallel
Strand 5	B	1088	1089	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	703	first strand
Strand 2	B	1034	1044	anti-parallel
Strand 3	B	1022	1031	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	711	first strand
Strand 2	B	833	836	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	763	765	first strand
Strand 2	C	677	679	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1095	1097	first strand
Strand 2	B	1061	1065	anti-parallel
Strand 3	B	1056	1058	anti-parallel
Strand 4	B	1108	1109	parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	49	53	anti-parallel
Strand 3	C	240	244	anti-parallel
Strand 4	C	75	80	anti-parallel
Strand 5	C	163	172	anti-parallel
Strand 6	C	175	184	anti-parallel
Strand 7	C	197	204	anti-parallel
Strand 8	C	24	25	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	43	first strand
Strand 2	C	246	254	anti-parallel
Strand 3	C	260	265	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	212	215	anti-parallel
Strand 3	C	90	93	anti-parallel
Strand 4	C	102	107	anti-parallel
Strand 5	C	112	115	anti-parallel
Strand 6	C	144	147	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	135	139	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	294	first strand
Strand 2	C	567	574	anti-parallel
Strand 3	C	584	588	anti-parallel
Strand 4	C	623	626	anti-parallel
Strand 5	C	617	620	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	303	first strand
Strand 2	C	513	518	parallel
Strand 3	C	521	529	anti-parallel
Strand 4	C	559	563	anti-parallel
Strand 5	C	548	552	anti-parallel
Strand 6	C	540	542	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	333	first strand
Strand 2	C	369	378	anti-parallel
Strand 3	C	482	491	anti-parallel
Strand 4	C	406	412	anti-parallel
Strand 5	C	351	355	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	499	500	parallel
Strand 3	C	366	367	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	467	469	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	449	first strand
Strand 2	C	463	464	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	630	first strand
Strand 2	C	667	671	parallel
Strand 3	C	645	649	anti-parallel
Strand 4	C	639	642	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	690	first strand
Strand 2	C	1047	1053	anti-parallel
Strand 3	C	1069	1072	anti-parallel
Strand 4	C	1077	1080	anti-parallel
Strand 5	C	1088	1089	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	703	first strand
Strand 2	C	1034	1044	anti-parallel
Strand 3	C	1022	1031	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	711	first strand
Strand 2	C	833	836	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1095	1097	first strand
Strand 2	C	1061	1065	anti-parallel
Strand 3	C	1056	1058	anti-parallel
Strand 4	C	1108	1109	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9F9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9F9Y