Analysis of interatomic Contacts of Structural Units in PDB entry:
9FA1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FA1 entry

There are 7 chains in PDB entry 9FA1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 266	ASP 627
B	LYS 266	ASP 627
C	LYS 266	ASP 627
D	LYS 266	ASP 627
E	LYS 266	ASP 627
F	LYS 266	ASP 627
S	T 1	T 8

There are148 helices in PDB entry 9FA1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	281	Right-handed alpha
Helix 2	AA2	A	284	295	Right-handed alpha
Helix 3	AA3	A	296	297	Right-handed 310
Helix 4	AA4	A	298	301	Right-handed 310
Helix 5	AA5	A	302	308	Right-handed alpha
Helix 6	AA6	A	310	315	Right-handed alpha
Helix 7	AA7	A	316	330	Right-handed alpha
Helix 8	AA8	A	332	355	Right-handed alpha
Helix 9	AA9	A	356	376	Right-handed alpha
Helix 10	AB1	A	383	398	Right-handed alpha
Helix 11	AB2	A	400	415	Right-handed alpha
Helix 12	AB3	A	431	444	Right-handed alpha
Helix 13	AB4	A	456	463	Right-handed alpha
Helix 14	AB5	A	480	484	Right-handed 310
Helix 15	AB6	A	488	497	Right-handed alpha
Helix 16	AB7	A	497	503	Right-handed alpha
Helix 17	AB8	A	534	539	Right-handed alpha
Helix 18	AB9	A	550	559	Right-handed alpha
Helix 19	AC1	A	561	566	Right-handed alpha
Helix 20	AC2	A	567	570	Right-handed 310
Helix 21	AC3	A	571	583	Right-handed alpha
Helix 22	AC4	A	584	588	Right-handed 310
Helix 23	AC5	A	592	607	Right-handed alpha
Helix 24	AC6	A	608	622	Right-handed alpha
Helix 25	AC7	B	269	281	Right-handed alpha
Helix 26	AC8	B	284	295	Right-handed alpha
Helix 27	AC9	B	296	297	Right-handed 310
Helix 28	AD1	B	298	301	Right-handed 310
Helix 29	AD2	B	302	308	Right-handed alpha
Helix 30	AD3	B	310	315	Right-handed alpha
Helix 31	AD4	B	316	328	Right-handed alpha
Helix 32	AD5	B	332	355	Right-handed alpha
Helix 33	AD6	B	356	376	Right-handed alpha
Helix 34	AD7	B	383	398	Right-handed alpha
Helix 35	AD8	B	400	415	Right-handed alpha
Helix 36	AD9	B	431	444	Right-handed alpha
Helix 37	AE1	B	456	462	Right-handed alpha
Helix 38	AE2	B	463	465	Right-handed 310
Helix 39	AE3	B	479	484	Right-handed 310
Helix 40	AE4	B	489	495	Right-handed alpha
Helix 41	AE5	B	497	503	Right-handed alpha
Helix 42	AE6	B	534	539	Right-handed alpha
Helix 43	AE7	B	550	559	Right-handed alpha
Helix 44	AE8	B	561	566	Right-handed alpha
Helix 45	AE9	B	567	570	Right-handed 310
Helix 46	AF1	B	571	583	Right-handed alpha
Helix 47	AF2	B	584	588	Right-handed 310
Helix 48	AF3	B	592	607	Right-handed alpha
Helix 49	AF4	B	608	622	Right-handed alpha
Helix 50	AF5	C	269	281	Right-handed alpha
Helix 51	AF6	C	284	295	Right-handed alpha
Helix 52	AF7	C	296	297	Right-handed 310
Helix 53	AF8	C	298	301	Right-handed 310
Helix 54	AF9	C	302	307	Right-handed alpha
Helix 55	AG1	C	310	315	Right-handed alpha
Helix 56	AG2	C	316	330	Right-handed alpha
Helix 57	AG3	C	332	355	Right-handed alpha
Helix 58	AG4	C	356	376	Right-handed alpha
Helix 59	AG5	C	383	398	Right-handed alpha
Helix 60	AG6	C	400	415	Right-handed alpha
Helix 61	AG7	C	431	444	Right-handed alpha
Helix 62	AG8	C	456	462	Right-handed alpha
Helix 63	AG9	C	463	465	Right-handed 310
Helix 64	AH1	C	480	484	Right-handed 310
Helix 65	AH2	C	489	497	Right-handed alpha
Helix 66	AH3	C	497	503	Right-handed alpha
Helix 67	AH4	C	534	539	Right-handed alpha
Helix 68	AH5	C	550	559	Right-handed alpha
Helix 69	AH6	C	561	566	Right-handed alpha
Helix 70	AH7	C	567	570	Right-handed 310
Helix 71	AH8	C	571	583	Right-handed alpha
Helix 72	AH9	C	584	588	Right-handed 310
Helix 73	AI1	C	589	591	Right-handed 310
Helix 74	AI2	C	592	607	Right-handed alpha
Helix 75	AI3	C	608	622	Right-handed alpha
Helix 76	AI4	D	269	281	Right-handed alpha
Helix 77	AI5	D	284	295	Right-handed alpha
Helix 78	AI6	D	296	297	Right-handed 310
Helix 79	AI7	D	298	301	Right-handed 310
Helix 80	AI8	D	302	308	Right-handed alpha
Helix 81	AI9	D	310	315	Right-handed alpha
Helix 82	AJ1	D	316	330	Right-handed alpha
Helix 83	AJ2	D	332	355	Right-handed alpha
Helix 84	AJ3	D	356	376	Right-handed alpha
Helix 85	AJ4	D	383	398	Right-handed alpha
Helix 86	AJ5	D	400	415	Right-handed alpha
Helix 87	AJ6	D	431	444	Right-handed alpha
Helix 88	AJ7	D	456	463	Right-handed alpha
Helix 89	AJ8	D	480	484	Right-handed 310
Helix 90	AJ9	D	489	496	Right-handed alpha
Helix 91	AK1	D	497	503	Right-handed alpha
Helix 92	AK2	D	534	539	Right-handed alpha
Helix 93	AK3	D	550	559	Right-handed alpha
Helix 94	AK4	D	561	566	Right-handed alpha
Helix 95	AK5	D	567	570	Right-handed 310
Helix 96	AK6	D	571	583	Right-handed alpha
Helix 97	AK7	D	584	588	Right-handed 310
Helix 98	AK8	D	592	607	Right-handed alpha
Helix 99	AK9	D	608	622	Right-handed alpha
Helix 100	AL1	E	269	280	Right-handed alpha
Helix 101	AL2	E	284	295	Right-handed alpha
Helix 102	AL3	E	296	297	Right-handed 310
Helix 103	AL4	E	298	301	Right-handed 310
Helix 104	AL5	E	302	308	Right-handed alpha
Helix 105	AL6	E	310	315	Right-handed alpha
Helix 106	AL7	E	316	330	Right-handed alpha
Helix 107	AL8	E	332	355	Right-handed alpha
Helix 108	AL9	E	356	376	Right-handed alpha
Helix 109	AM1	E	383	396	Right-handed alpha
Helix 110	AM2	E	400	415	Right-handed alpha
Helix 111	AM3	E	431	444	Right-handed alpha
Helix 112	AM4	E	456	462	Right-handed alpha
Helix 113	AM5	E	463	465	Right-handed 310
Helix 114	AM6	E	480	484	Right-handed 310
Helix 115	AM7	E	489	497	Right-handed alpha
Helix 116	AM8	E	497	503	Right-handed alpha
Helix 117	AM9	E	534	539	Right-handed alpha
Helix 118	AN1	E	550	559	Right-handed alpha
Helix 119	AN2	E	561	566	Right-handed alpha
Helix 120	AN3	E	571	583	Right-handed alpha
Helix 121	AN4	E	584	588	Right-handed 310
Helix 122	AN5	E	589	591	Right-handed 310
Helix 123	AN6	E	592	607	Right-handed alpha
Helix 124	AN7	E	608	621	Right-handed alpha
Helix 125	AN8	F	269	281	Right-handed alpha
Helix 126	AN9	F	284	295	Right-handed alpha
Helix 127	AO1	F	296	297	Right-handed 310
Helix 128	AO2	F	298	301	Right-handed 310
Helix 129	AO3	F	302	307	Right-handed alpha
Helix 130	AO4	F	310	315	Right-handed alpha
Helix 131	AO5	F	316	330	Right-handed alpha
Helix 132	AO6	F	332	355	Right-handed alpha
Helix 133	AO7	F	356	376	Right-handed alpha
Helix 134	AO8	F	383	396	Right-handed alpha
Helix 135	AO9	F	400	415	Right-handed alpha
Helix 136	AP1	F	431	444	Right-handed alpha
Helix 137	AP2	F	453	461	Right-handed alpha
Helix 138	AP3	F	462	465	Right-handed 310
Helix 139	AP4	F	479	484	Right-handed 310
Helix 140	AP5	F	489	497	Right-handed alpha
Helix 141	AP6	F	497	503	Right-handed alpha
Helix 142	AP7	F	534	539	Right-handed alpha
Helix 143	AP8	F	550	559	Right-handed alpha
Helix 144	AP9	F	561	566	Right-handed alpha
Helix 145	AQ1	F	571	583	Right-handed alpha
Helix 146	AQ2	F	584	588	Right-handed 310
Helix 147	AQ3	F	592	607	Right-handed alpha
Helix 148	AQ4	F	608	621	Right-handed alpha

There are 12 sheets in PDB entry 9FA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	424	first strand
Strand 2	A	524	527	parallel
Strand 3	A	470	472	parallel
Strand 4	A	446	448	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	509	first strand
Strand 2	A	517	520	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	470	472	parallel
Strand 3	B	524	528	parallel
Strand 4	B	421	425	parallel
Strand 5	B	541	546	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	511	first strand
Strand 2	B	514	519	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	448	first strand
Strand 2	C	469	472	parallel
Strand 3	C	524	528	parallel
Strand 4	C	421	425	parallel
Strand 5	C	541	546	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	509	first strand
Strand 2	C	517	519	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	448	first strand
Strand 2	D	469	472	parallel
Strand 3	D	524	528	parallel
Strand 4	D	421	425	parallel
Strand 5	D	541	546	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	511	first strand
Strand 2	D	514	519	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	446	448	first strand
Strand 2	E	470	472	parallel
Strand 3	E	524	528	parallel
Strand 4	E	421	425	parallel
Strand 5	E	543	546	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	510	first strand
Strand 2	E	516	519	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	448	first strand
Strand 2	F	470	472	parallel
Strand 3	F	524	527	parallel
Strand 4	F	421	425	parallel
Strand 5	F	543	546	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	507	511	first strand
Strand 2	F	514	519	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FA1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FA1