Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FAB entry

There are 5 chains in PDB entry 9FAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 117
B
 SER 1LEU 117
C
 SER 1LEU 117
D
 SER 1LEU 117
E
 SER 1LEU 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9FAB

There are 11 sheets in PDB entry 9FAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
B
3 5parallel
Strand 3
A
2 5parallel
Strand 4
C
2 5parallel
Strand 5
E
3 5parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 12first strand
Strand 2
B
9 12parallel
Strand 3
A
9 12parallel
Strand 4
C
9 12parallel
Strand 5
E
9 12parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 23first strand
Strand 2
B
17 23parallel
Strand 3
A
17 23parallel
Strand 4
C
17 23parallel
Strand 5
E
17 23parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 30first strand
Strand 2
B
26 30parallel
Strand 3
A
26 30parallel
Strand 4
C
26 30parallel
Strand 5
E
26 30parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 37first strand
Strand 2
B
33 37parallel
Strand 3
A
33 37parallel
Strand 4
C
33 37parallel
Strand 5
E
33 37parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 52first strand
Strand 2
B
44 52parallel
Strand 3
A
44 52parallel
Strand 4
C
44 52parallel
Strand 5
E
44 52parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 75first strand
Strand 2
B
72 75parallel
Strand 3
A
72 75parallel
Strand 4
C
72 75parallel
Strand 5
E
72 75parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 86first strand
Strand 2
B
83 86parallel
Strand 3
A
83 86parallel
Strand 4
C
83 86parallel
Strand 5
E
83 86parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 97first strand
Strand 2
B
89 97parallel
Strand 3
A
89 97parallel
Strand 4
C
89 97parallel
Strand 5
E
89 97parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 103first strand
Strand 2
B
102 103parallel
Strand 3
A
102 103parallel
Strand 4
C
102 103parallel
Strand 5
E
102 103parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 116first strand
Strand 2
B
114 116parallel
Strand 3
A
114 116parallel
Strand 4
C
114 116parallel
Strand 5
E
114 116parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il