Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FAF entry

There are 3 chains in PDB entry 9FAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 179GLU 371
B
 ASP 179GLU 371
C
 THR 180GLU 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9FAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
258 260Right-handed 310
Helix 2
AA2
A
278 282Right-handed 310
Helix 3
AA3
A
298 302Right-handed 310
Helix 4
AA4
A
317 319Right-handed 310
Helix 5
AA5
A
334 338Right-handed 310
Helix 6
AA6
B
278 282Right-handed 310
Helix 7
AA7
B
298 302Right-handed 310
Helix 8
AA8
B
317 319Right-handed 310
Helix 9
AA9
B
334 338Right-handed 310
Helix 10
AB1
C
278 282Right-handed 310
Helix 11
AB2
C
298 302Right-handed 310
Helix 12
AB3
C
317 319Right-handed 310
Helix 13
AB4
C
334 338Right-handed 310
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There are 9 sheets in PDB entry 9FAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
201 210anti-parallel
Strand 4
A
213 222anti-parallel
Strand 5
A
363 368anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
356 357anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 245first strand
Strand 2
A
340 347anti-parallel
Strand 3
A
323 330anti-parallel
Strand 4
A
309 315anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
182 184anti-parallel
Strand 3
B
201 210anti-parallel
Strand 4
B
213 222anti-parallel
Strand 5
B
363 368anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
356 357anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 245first strand
Strand 2
B
340 347anti-parallel
Strand 3
B
323 330anti-parallel
Strand 4
B
309 315anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 264first strand
Strand 2
C
182 184anti-parallel
Strand 3
C
201 210anti-parallel
Strand 4
C
213 222anti-parallel
Strand 5
C
363 368anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
356 357anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 245first strand
Strand 2
C
340 347anti-parallel
Strand 3
C
323 330anti-parallel
Strand 4
C
309 315anti-parallel
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