Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FAP entry

There are 10 chains in PDB entry 9FAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	LEU 416
B	MET 9	VAL 447
C	VAL 27	PHE 379
C	PHE 382	ASP 384
C	HIS 396	GLY 429
D	THR 12	LEU 416
E	MET 9	VAL 447
H	ASP 668	LYS 700
L	TYR 11	ASP 203
G	GLN 1	SER 529

There are 63 helices in PDB entry 9FAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	142	146	Right-handed 310
Helix 5	AA5	A	223	230	Right-handed alpha
Helix 6	AA6	A	230	244	Right-handed alpha
Helix 7	AA7	A	245	247	Right-handed 310
Helix 8	AA8	A	251	276	Right-handed alpha
Helix 9	AA9	A	284	310	Right-handed alpha
Helix 10	AB1	A	390	415	Right-handed alpha
Helix 11	AB2	B	10	21	Right-handed alpha
Helix 12	AB3	B	70	73	Right-handed 310
Helix 13	AB4	B	84	91	Right-handed 310
Helix 14	AB5	B	170	173	Right-handed 310
Helix 15	AB6	B	218	225	Right-handed alpha
Helix 16	AB7	B	225	237	Right-handed alpha
Helix 17	AB8	B	238	242	Right-handed 310
Helix 18	AB9	B	246	272	Right-handed alpha
Helix 19	AC1	B	279	308	Right-handed alpha
Helix 20	AC2	B	309	314	Right-handed alpha
Helix 21	AC3	B	420	446	Right-handed alpha
Helix 22	AC4	C	28	36	Right-handed alpha
Helix 23	AC5	C	85	88	Right-handed 310
Helix 24	AC6	C	99	106	Right-handed 310
Helix 25	AC7	C	233	240	Right-handed alpha
Helix 26	AC8	C	240	257	Right-handed alpha
Helix 27	AC9	C	261	282	Right-handed alpha
Helix 28	AD1	C	283	285	Right-handed 310
Helix 29	AD2	C	294	323	Right-handed alpha
Helix 30	AD3	C	401	427	Right-handed alpha
Helix 31	AD4	D	13	22	Right-handed alpha
Helix 32	AD5	D	73	76	Right-handed 310
Helix 33	AD6	D	87	92	Right-handed alpha
Helix 34	AD7	D	142	146	Right-handed 310
Helix 35	AD8	D	223	230	Right-handed alpha
Helix 36	AD9	D	230	244	Right-handed alpha
Helix 37	AE1	D	245	247	Right-handed 310
Helix 38	AE2	D	251	276	Right-handed alpha
Helix 39	AE3	D	284	310	Right-handed alpha
Helix 40	AE4	D	390	415	Right-handed alpha
Helix 41	AE5	E	10	21	Right-handed alpha
Helix 42	AE6	E	70	73	Right-handed 310
Helix 43	AE7	E	84	90	Right-handed 310
Helix 44	AE8	E	139	143	Right-handed 310
Helix 45	AE9	E	170	173	Right-handed 310
Helix 46	AF1	E	218	225	Right-handed alpha
Helix 47	AF2	E	225	237	Right-handed alpha
Helix 48	AF3	E	238	242	Right-handed 310
Helix 49	AF4	E	246	272	Right-handed alpha
Helix 50	AF5	E	279	308	Right-handed alpha
Helix 51	AF6	E	419	447	Right-handed alpha
Helix 52	AF7	H	673	699	Right-handed alpha
Helix 53	AF8	L	12	43	Right-handed alpha
Helix 54	AF9	L	83	87	Right-handed 310
Helix 55	AG1	L	89	113	Right-handed alpha
Helix 56	AG2	L	114	117	Right-handed 310
Helix 57	AG3	L	120	146	Right-handed alpha
Helix 58	AG4	L	147	151	Right-handed 310
Helix 59	AG5	L	152	160	Right-handed alpha
Helix 60	AG6	L	174	201	Right-handed alpha
Helix 61	AG7	G	467	470	Right-handed 310
Helix 62	AG8	G	492	496	Right-handed 310
Helix 63	AG9	G	512	516	Right-handed 310

There are 18 sheets in PDB entry 9FAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	117	122	anti-parallel
Strand 3	A	126	138	anti-parallel
Strand 4	A	59	71	anti-parallel
Strand 5	A	39	54	anti-parallel
Strand 6	A	167	171	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	109	first strand
Strand 2	A	126	138	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	39	54	anti-parallel
Strand 5	A	179	181	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	209	221	anti-parallel
Strand 4	A	191	204	anti-parallel
Strand 5	G	462	465	anti-parallel
Strand 6	G	450	457	anti-parallel
Strand 7	G	439	446	anti-parallel
Strand 8	G	497	504	anti-parallel
Strand 9	G	523	527	anti-parallel
Strand 10	G	11	12	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	209	221	anti-parallel
Strand 4	A	191	204	anti-parallel
Strand 5	G	462	465	anti-parallel
Strand 6	G	450	457	anti-parallel
Strand 7	G	439	446	anti-parallel
Strand 8	G	497	504	anti-parallel
Strand 9	G	518	519	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	116	121	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	190	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	162	171	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	201	214	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	126	138	anti-parallel
Strand 4	D	59	71	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	167	171	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	126	138	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	39	54	anti-parallel
Strand 5	D	179	181	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	150	159	anti-parallel
Strand 3	D	209	221	anti-parallel
Strand 4	D	191	204	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	47	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	47	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	186	199	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	76	78	first strand
Strand 2	L	64	66	anti-parallel
Strand 3	L	57	59	anti-parallel
Strand 4	L	47	48	anti-parallel
Strand 5	L	172	173	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	423	431	anti-parallel
Strand 3	G	483	489	anti-parallel
Strand 4	G	473	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAP