Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FAR entry

There are 5 chains in PDB entry 9FAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 369	PHE 379
C	PHE 382	ASP 384
C	HIS 396	GLY 429
H	ASP 668	LYS 700
L	TYR 11	ASP 203

There are 11 helices in PDB entry 9FAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	374	379	Right-handed alpha
Helix 2	AA2	C	401	427	Right-handed alpha
Helix 3	AA3	H	672	699	Right-handed alpha
Helix 4	AA4	L	12	43	Right-handed alpha
Helix 5	AA5	L	83	87	Right-handed 310
Helix 6	AA6	L	89	113	Right-handed alpha
Helix 7	AA7	L	114	117	Right-handed 310
Helix 8	AA8	L	120	146	Right-handed alpha
Helix 9	AA9	L	147	151	Right-handed 310
Helix 10	AB1	L	152	160	Right-handed alpha
Helix 11	AB2	L	174	203	Right-handed alpha

There is 1 sheet (AA1) in PDB entry 9FAR.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	76	78	first strand
Strand 2	L	64	66	anti-parallel
Strand 3	L	57	59	anti-parallel
Strand 4	L	47	48	anti-parallel
Strand 5	L	172	173	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAR