Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FAT entry

There are 10 chains in PDB entry 9FAT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 10	LEU 422
B	ASN 8	VAL 447
C	GLY 25	PHE 379
C	PHE 382	ASP 384
C	HIS 396	GLY 429
D	ASP 10	ARG 418
E	GLY 7	VAL 447
G	GLN 1	SER 529
H	ASP 668	LYS 700
L	HIS 14	ASP 203

There are 66 helices in PDB entry 9FAT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	87	94	Right-handed alpha
Helix 4	AA4	A	174	179	Right-handed alpha
Helix 5	AA5	A	223	230	Right-handed alpha
Helix 6	AA6	A	230	243	Right-handed alpha
Helix 7	AA7	A	244	246	Right-handed 310
Helix 8	AA8	A	251	273	Right-handed alpha
Helix 9	AA9	A	284	311	Right-handed alpha
Helix 10	AB1	A	390	417	Right-handed alpha
Helix 11	AB2	B	9	21	Right-handed alpha
Helix 12	AB3	B	70	73	Right-handed 310
Helix 13	AB4	B	84	91	Right-handed 310
Helix 14	AB5	B	139	143	Right-handed 310
Helix 15	AB6	B	218	225	Right-handed alpha
Helix 16	AB7	B	225	238	Right-handed alpha
Helix 17	AB8	B	239	242	Right-handed 310
Helix 18	AB9	B	246	270	Right-handed alpha
Helix 19	AC1	B	279	308	Right-handed alpha
Helix 20	AC2	B	309	317	Right-handed alpha
Helix 21	AC3	B	419	447	Right-handed alpha
Helix 22	AC4	C	26	36	Right-handed alpha
Helix 23	AC5	C	85	88	Right-handed 310
Helix 24	AC6	C	99	103	Right-handed 310
Helix 25	AC7	C	192	196	Right-handed 310
Helix 26	AC8	C	233	240	Right-handed alpha
Helix 27	AC9	C	240	254	Right-handed alpha
Helix 28	AD1	C	255	257	Right-handed 310
Helix 29	AD2	C	261	284	Right-handed alpha
Helix 30	AD3	C	285	287	Right-handed 310
Helix 31	AD4	C	294	322	Right-handed alpha
Helix 32	AD5	C	374	379	Right-handed alpha
Helix 33	AD6	C	401	427	Right-handed alpha
Helix 34	AD7	D	11	23	Right-handed alpha
Helix 35	AD8	D	73	76	Right-handed 310
Helix 36	AD9	D	88	94	Right-handed 310
Helix 37	AE1	D	174	178	Right-handed alpha
Helix 38	AE2	D	223	230	Right-handed alpha
Helix 39	AE3	D	230	243	Right-handed alpha
Helix 40	AE4	D	244	247	Right-handed 310
Helix 41	AE5	D	251	272	Right-handed alpha
Helix 42	AE6	D	273	277	Right-handed 310
Helix 43	AE7	D	284	311	Right-handed alpha
Helix 44	AE8	D	390	418	Right-handed alpha
Helix 45	AE9	E	8	21	Right-handed alpha
Helix 46	AF1	E	84	91	Right-handed 310
Helix 47	AF2	E	170	174	Right-handed 310
Helix 48	AF3	E	218	225	Right-handed alpha
Helix 49	AF4	E	225	238	Right-handed alpha
Helix 50	AF5	E	239	242	Right-handed 310
Helix 51	AF6	E	246	270	Right-handed alpha
Helix 52	AF7	E	279	308	Right-handed alpha
Helix 53	AF8	E	309	317	Right-handed alpha
Helix 54	AF9	E	419	447	Right-handed alpha
Helix 55	AG1	G	467	470	Right-handed 310
Helix 56	AG2	G	492	496	Right-handed 310
Helix 57	AG3	G	512	516	Right-handed 310
Helix 58	AG4	H	673	699	Right-handed alpha
Helix 59	AG5	L	15	43	Right-handed alpha
Helix 60	AG6	L	83	87	Right-handed 310
Helix 61	AG7	L	89	113	Right-handed alpha
Helix 62	AG8	L	114	118	Right-handed 310
Helix 63	AG9	L	120	146	Right-handed alpha
Helix 64	AH1	L	147	151	Right-handed 310
Helix 65	AH2	L	152	160	Right-handed alpha
Helix 66	AH3	L	174	203	Right-handed alpha

There are 19 sheets in PDB entry 9FAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	118	122	anti-parallel
Strand 3	A	129	130	anti-parallel
Strand 4	A	67	70	anti-parallel
Strand 5	A	39	44	anti-parallel
Strand 6	A	167	171	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	133	138	anti-parallel
Strand 3	A	59	64	anti-parallel
Strand 4	A	46	54	anti-parallel
Strand 5	A	180	181	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	209	221	anti-parallel
Strand 4	A	191	204	anti-parallel
Strand 5	G	462	465	anti-parallel
Strand 6	G	450	457	anti-parallel
Strand 7	G	440	446	anti-parallel
Strand 8	G	497	503	anti-parallel
Strand 9	G	523	527	anti-parallel
Strand 10	G	11	12	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	209	221	anti-parallel
Strand 4	A	191	204	anti-parallel
Strand 5	G	462	465	anti-parallel
Strand 6	G	450	457	anti-parallel
Strand 7	G	440	446	anti-parallel
Strand 8	G	497	503	anti-parallel
Strand 9	G	518	519	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	64	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	56	61	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	186	200	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	182	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	138	150	anti-parallel
Strand 3	C	71	83	anti-parallel
Strand 4	C	51	66	anti-parallel
Strand 5	C	188	190	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	162	171	anti-parallel
Strand 3	C	218	231	anti-parallel
Strand 4	C	201	215	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	126	131	anti-parallel
Strand 4	D	67	71	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	167	171	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	133	138	anti-parallel
Strand 3	D	59	64	anti-parallel
Strand 4	D	39	54	anti-parallel
Strand 5	D	179	181	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	150	158	anti-parallel
Strand 3	D	210	221	anti-parallel
Strand 4	D	191	199	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	150	158	anti-parallel
Strand 3	D	210	221	anti-parallel
Strand 4	D	202	203	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	56	68	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	101	106	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	40	anti-parallel
Strand 6	E	164	168	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	186	199	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	424	431	anti-parallel
Strand 3	G	483	488	anti-parallel
Strand 4	G	473	478	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	78	first strand
Strand 2	L	64	67	anti-parallel
Strand 3	L	57	59	anti-parallel
Strand 4	L	47	48	anti-parallel
Strand 5	L	172	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FAT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAT