Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FAW entry

There are 12 chains in PDB entry 9FAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 8	VAL 447
E	ASP 5	VAL 447
A	GLY 7	VAL 447
D	ASN 8	VAL 447
C	LYS 21	PHE 379
C	PHE 382	ASP 384
C	HIS 396	GLY 429
H	ASP 668	LYS 700
L	ARG 17	ASP 203
K	GLN 1	VAL 510
O	GLN 1	VAL 510
F	GLN 1	VAL 510

There are 69 helices in PDB entry 9FAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	21	Right-handed alpha
Helix 2	AA2	B	70	73	Right-handed 310
Helix 3	AA3	B	84	91	Right-handed 310
Helix 4	AA4	B	170	173	Right-handed 310
Helix 5	AA5	B	225	237	Right-handed alpha
Helix 6	AA6	B	237	242	Right-handed alpha
Helix 7	AA7	B	246	268	Right-handed alpha
Helix 8	AA8	B	279	307	Right-handed alpha
Helix 9	AA9	B	422	447	Right-handed alpha
Helix 10	AB1	E	8	21	Right-handed alpha
Helix 11	AB2	E	70	73	Right-handed 310
Helix 12	AB3	E	84	91	Right-handed 310
Helix 13	AB4	E	170	173	Right-handed 310
Helix 14	AB5	E	177	181	Right-handed 310
Helix 15	AB6	E	218	225	Right-handed alpha
Helix 16	AB7	E	225	242	Right-handed alpha
Helix 17	AB8	E	246	269	Right-handed alpha
Helix 18	AB9	E	279	308	Right-handed alpha
Helix 19	AC1	E	424	429	Right-handed alpha
Helix 20	AC2	E	429	446	Right-handed alpha
Helix 21	AC3	A	10	20	Right-handed alpha
Helix 22	AC4	A	70	73	Right-handed 310
Helix 23	AC5	A	84	91	Right-handed 310
Helix 24	AC6	A	170	173	Right-handed 310
Helix 25	AC7	A	177	181	Right-handed 310
Helix 26	AC8	A	218	225	Right-handed alpha
Helix 27	AC9	A	225	238	Right-handed alpha
Helix 28	AD1	A	239	241	Right-handed 310
Helix 29	AD2	A	246	270	Right-handed alpha
Helix 30	AD3	A	279	307	Right-handed alpha
Helix 31	AD4	A	420	446	Right-handed alpha
Helix 32	AD5	D	9	21	Right-handed alpha
Helix 33	AD6	D	70	73	Right-handed 310
Helix 34	AD7	D	84	90	Right-handed 310
Helix 35	AD8	D	170	173	Right-handed 310
Helix 36	AD9	D	177	181	Right-handed 310
Helix 37	AE1	D	218	225	Right-handed alpha
Helix 38	AE2	D	225	238	Right-handed alpha
Helix 39	AE3	D	246	268	Right-handed alpha
Helix 40	AE4	D	279	308	Right-handed alpha
Helix 41	AE5	D	422	447	Right-handed alpha
Helix 42	AE6	C	23	36	Right-handed alpha
Helix 43	AE7	C	85	88	Right-handed 310
Helix 44	AE8	C	99	104	Right-handed alpha
Helix 45	AE9	C	192	196	Right-handed 310
Helix 46	AF1	C	233	240	Right-handed alpha
Helix 47	AF2	C	240	254	Right-handed alpha
Helix 48	AF3	C	255	257	Right-handed 310
Helix 49	AF4	C	261	285	Right-handed alpha
Helix 50	AF5	C	294	323	Right-handed alpha
Helix 51	AF6	C	374	379	Right-handed alpha
Helix 52	AF7	C	398	400	Right-handed 310
Helix 53	AF8	C	401	428	Right-handed alpha
Helix 54	AF9	H	672	699	Right-handed alpha
Helix 55	AG1	L	18	43	Right-handed alpha
Helix 56	AG2	L	83	87	Right-handed 310
Helix 57	AG3	L	89	113	Right-handed alpha
Helix 58	AG4	L	114	118	Right-handed 310
Helix 59	AG5	L	120	146	Right-handed alpha
Helix 60	AG6	L	147	150	Right-handed 310
Helix 61	AG7	L	152	159	Right-handed alpha
Helix 62	AG8	L	174	203	Right-handed alpha
Helix 63	AG9	K	495	499	Right-handed 310
Helix 64	AH1	O	461	463	Right-handed 310
Helix 65	AH2	O	474	478	Right-handed 310
Helix 66	AH3	O	495	497	Right-handed 310
Helix 67	AH4	F	449	452	Right-handed 310
Helix 68	AH5	F	474	478	Right-handed 310
Helix 69	AH6	F	495	499	Right-handed 310

There are 25 sheets in PDB entry 9FAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	47	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	47	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	186	199	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	123	135	anti-parallel
Strand 4	A	56	68	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	164	168	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	36	51	anti-parallel
Strand 5	A	175	176	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	186	199	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	123	135	anti-parallel
Strand 4	D	56	68	anti-parallel
Strand 5	D	36	51	anti-parallel
Strand 6	D	164	168	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	56	68	anti-parallel
Strand 4	D	36	51	anti-parallel
Strand 5	D	175	176	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	204	216	anti-parallel
Strand 4	D	186	199	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	116	121	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	190	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	162	171	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	201	214	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	49	first strand
Strand 2	L	171	173	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	65	66	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	7	first strand
Strand 2	K	406	413	anti-parallel
Strand 3	K	465	470	anti-parallel
Strand 4	K	455	459	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	445	447	first strand
Strand 2	K	432	438	anti-parallel
Strand 3	K	421	426	anti-parallel
Strand 4	K	479	485	anti-parallel
Strand 5	K	501	502	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	445	447	first strand
Strand 2	K	432	438	anti-parallel
Strand 3	K	421	426	anti-parallel
Strand 4	K	479	485	anti-parallel
Strand 5	K	506	508	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	7	first strand
Strand 2	O	407	413	anti-parallel
Strand 3	O	465	470	anti-parallel
Strand 4	O	455	460	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	445	447	first strand
Strand 2	O	432	438	anti-parallel
Strand 3	O	420	426	anti-parallel
Strand 4	O	479	486	anti-parallel
Strand 5	O	499	502	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	445	447	first strand
Strand 2	O	432	438	anti-parallel
Strand 3	O	420	426	anti-parallel
Strand 4	O	479	486	anti-parallel
Strand 5	O	506	508	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	405	413	anti-parallel
Strand 3	F	465	470	anti-parallel
Strand 4	F	455	460	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	447	first strand
Strand 2	F	433	438	anti-parallel
Strand 3	F	420	426	anti-parallel
Strand 4	F	479	486	anti-parallel
Strand 5	F	506	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAW