Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FAX entry

There are 14 chains in PDB entry 9FAX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 25	PHE 379
E	PHE 382	ASP 384
E	HIS 396	GLY 429
G	ASP 668	LYS 700
I	MET 16	ARG 200
B	MET 9	VAL 447
A	MET 9	VAL 447
D	MET 9	VAL 447
C	ASP 26	PHE 379
C	PHE 382	ASP 384
C	HIS 396	GLY 429
H	ASP 668	LYS 700
L	MET 16	ASP 203
F	GLN 1	VAL 510

There are 71 helices in PDB entry 9FAX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	25	36	Right-handed alpha
Helix 2	AA2	E	101	105	Right-handed 310
Helix 3	AA3	E	154	158	Right-handed 310
Helix 4	AA4	E	192	196	Right-handed 310
Helix 5	AA5	E	233	240	Right-handed alpha
Helix 6	AA6	E	240	253	Right-handed alpha
Helix 7	AA7	E	254	257	Right-handed 310
Helix 8	AA8	E	261	284	Right-handed alpha
Helix 9	AA9	E	294	322	Right-handed alpha
Helix 10	AB1	E	374	379	Right-handed alpha
Helix 11	AB2	E	396	400	Right-handed 310
Helix 12	AB3	E	401	427	Right-handed alpha
Helix 13	AB4	G	672	699	Right-handed alpha
Helix 14	AB5	I	17	43	Right-handed alpha
Helix 15	AB6	I	83	87	Right-handed 310
Helix 16	AB7	I	89	113	Right-handed alpha
Helix 17	AB8	I	114	118	Right-handed 310
Helix 18	AB9	I	120	146	Right-handed alpha
Helix 19	AC1	I	147	151	Right-handed 310
Helix 20	AC2	I	152	159	Right-handed alpha
Helix 21	AC3	I	174	200	Right-handed alpha
Helix 22	AC4	B	10	21	Right-handed alpha
Helix 23	AC5	B	84	90	Right-handed 310
Helix 24	AC6	B	170	173	Right-handed 310
Helix 25	AC7	B	218	225	Right-handed alpha
Helix 26	AC8	B	225	237	Right-handed alpha
Helix 27	AC9	B	238	242	Right-handed 310
Helix 28	AD1	B	246	272	Right-handed alpha
Helix 29	AD2	B	279	308	Right-handed alpha
Helix 30	AD3	B	421	446	Right-handed alpha
Helix 31	AD4	A	10	21	Right-handed alpha
Helix 32	AD5	A	70	73	Right-handed 310
Helix 33	AD6	A	84	91	Right-handed alpha
Helix 34	AD7	A	139	143	Right-handed 310
Helix 35	AD8	A	170	173	Right-handed 310
Helix 36	AD9	A	219	225	Right-handed alpha
Helix 37	AE1	A	225	238	Right-handed alpha
Helix 38	AE2	A	239	241	Right-handed 310
Helix 39	AE3	A	246	270	Right-handed alpha
Helix 40	AE4	A	279	306	Right-handed alpha
Helix 41	AE5	A	421	447	Right-handed alpha
Helix 42	AE6	D	10	21	Right-handed alpha
Helix 43	AE7	D	70	73	Right-handed 310
Helix 44	AE8	D	84	91	Right-handed 310
Helix 45	AE9	D	139	143	Right-handed 310
Helix 46	AF1	D	170	173	Right-handed 310
Helix 47	AF2	D	218	225	Right-handed alpha
Helix 48	AF3	D	225	238	Right-handed alpha
Helix 49	AF4	D	239	242	Right-handed 310
Helix 50	AF5	D	246	270	Right-handed alpha
Helix 51	AF6	D	279	306	Right-handed alpha
Helix 52	AF7	D	421	447	Right-handed alpha
Helix 53	AF8	C	27	34	Right-handed alpha
Helix 54	AF9	C	85	88	Right-handed 310
Helix 55	AG1	C	99	106	Right-handed alpha
Helix 56	AG2	C	192	196	Right-handed 310
Helix 57	AG3	C	233	257	Right-handed alpha
Helix 58	AG4	C	261	282	Right-handed alpha
Helix 59	AG5	C	283	286	Right-handed 310
Helix 60	AG6	C	294	324	Right-handed alpha
Helix 61	AG7	C	374	380	Right-handed alpha
Helix 62	AG8	C	398	400	Right-handed 310
Helix 63	AG9	C	401	427	Right-handed alpha
Helix 64	AH1	H	672	699	Right-handed alpha
Helix 65	AH2	L	17	43	Right-handed alpha
Helix 66	AH3	L	89	116	Right-handed alpha
Helix 67	AH4	L	120	146	Right-handed alpha
Helix 68	AH5	L	147	151	Right-handed 310
Helix 69	AH6	L	152	160	Right-handed alpha
Helix 70	AH7	L	174	200	Right-handed alpha
Helix 71	AH8	F	474	478	Right-handed 310

There are 21 sheets in PDB entry 9FAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	138	142	anti-parallel
Strand 4	E	74	83	anti-parallel
Strand 5	E	145	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	138	142	anti-parallel
Strand 4	E	74	83	anti-parallel
Strand 5	E	51	62	anti-parallel
Strand 6	E	179	183	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	162	171	anti-parallel
Strand 3	E	221	231	anti-parallel
Strand 4	E	201	212	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	47	48	first strand
Strand 2	I	57	59	anti-parallel
Strand 3	I	64	66	anti-parallel
Strand 4	I	76	78	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	123	135	anti-parallel
Strand 4	A	56	68	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	164	168	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	36	51	anti-parallel
Strand 5	A	175	176	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	186	199	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	56	68	anti-parallel
Strand 4	D	36	51	anti-parallel
Strand 5	D	164	168	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	56	68	anti-parallel
Strand 4	D	36	51	anti-parallel
Strand 5	D	175	176	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	204	216	anti-parallel
Strand 4	D	186	199	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	129	133	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	183	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	138	150	anti-parallel
Strand 3	C	71	83	anti-parallel
Strand 4	C	51	66	anti-parallel
Strand 5	C	189	190	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	162	170	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	201	214	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	48	first strand
Strand 2	L	172	173	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	59	first strand
Strand 2	L	64	66	anti-parallel
Strand 3	L	76	78	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	405	413	anti-parallel
Strand 3	F	465	470	anti-parallel
Strand 4	F	455	460	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	447	first strand
Strand 2	F	432	438	anti-parallel
Strand 3	F	420	426	anti-parallel
Strand 4	F	479	486	anti-parallel
Strand 5	F	501	502	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	447	first strand
Strand 2	F	432	438	anti-parallel
Strand 3	F	420	426	anti-parallel
Strand 4	F	479	486	anti-parallel
Strand 5	F	506	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FAX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FAX