Analysis of interatomic Contacts of Structural Units in PDB entry:
9FBD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FBD entry

There are 6 chains in PDB entry 9FBD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	GLY 291
B	GLU 3	VAL 290
C	GLU 3	VAL 290
D	GLU 3	VAL 290
E	GLU 3	GLY 291
F	GLU 3	GLY 291

There are 90 helices in PDB entry 9FBD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	36	57	Right-handed alpha
Helix 3	AA3	A	61	71	Right-handed alpha
Helix 4	AA4	A	77	82	Right-handed 310
Helix 5	AA5	A	94	109	Right-handed alpha
Helix 6	AA6	A	123	132	Right-handed alpha
Helix 7	AA7	A	133	135	Right-handed 310
Helix 8	AA8	A	161	175	Right-handed alpha
Helix 9	AA9	A	189	207	Right-handed alpha
Helix 10	AB1	A	211	224	Right-handed alpha
Helix 11	AB2	A	228	237	Right-handed alpha
Helix 12	AB3	A	237	253	Right-handed alpha
Helix 13	AB4	A	254	258	Right-handed 310
Helix 14	AB5	A	260	269	Right-handed alpha
Helix 15	AB6	A	273	277	Right-handed 310
Helix 16	AB7	B	13	26	Right-handed alpha
Helix 17	AB8	B	36	57	Right-handed alpha
Helix 18	AB9	B	61	71	Right-handed alpha
Helix 19	AC1	B	77	82	Right-handed 310
Helix 20	AC2	B	94	109	Right-handed alpha
Helix 21	AC3	B	123	132	Right-handed alpha
Helix 22	AC4	B	133	135	Right-handed 310
Helix 23	AC5	B	161	175	Right-handed alpha
Helix 24	AC6	B	189	207	Right-handed alpha
Helix 25	AC7	B	211	224	Right-handed alpha
Helix 26	AC8	B	228	237	Right-handed alpha
Helix 27	AC9	B	237	253	Right-handed alpha
Helix 28	AD1	B	254	258	Right-handed 310
Helix 29	AD2	B	260	269	Right-handed alpha
Helix 30	AD3	B	273	277	Right-handed 310
Helix 31	AD4	C	13	26	Right-handed alpha
Helix 32	AD5	C	36	57	Right-handed alpha
Helix 33	AD6	C	61	71	Right-handed alpha
Helix 34	AD7	C	77	82	Right-handed 310
Helix 35	AD8	C	94	109	Right-handed alpha
Helix 36	AD9	C	123	132	Right-handed alpha
Helix 37	AE1	C	133	135	Right-handed 310
Helix 38	AE2	C	161	175	Right-handed alpha
Helix 39	AE3	C	189	207	Right-handed alpha
Helix 40	AE4	C	211	224	Right-handed alpha
Helix 41	AE5	C	228	237	Right-handed alpha
Helix 42	AE6	C	237	253	Right-handed alpha
Helix 43	AE7	C	254	258	Right-handed 310
Helix 44	AE8	C	260	269	Right-handed alpha
Helix 45	AE9	C	273	277	Right-handed 310
Helix 46	AF1	D	13	26	Right-handed alpha
Helix 47	AF2	D	36	57	Right-handed alpha
Helix 48	AF3	D	61	71	Right-handed alpha
Helix 49	AF4	D	77	82	Right-handed 310
Helix 50	AF5	D	94	109	Right-handed alpha
Helix 51	AF6	D	123	132	Right-handed alpha
Helix 52	AF7	D	133	135	Right-handed 310
Helix 53	AF8	D	161	175	Right-handed alpha
Helix 54	AF9	D	189	207	Right-handed alpha
Helix 55	AG1	D	211	224	Right-handed alpha
Helix 56	AG2	D	228	237	Right-handed alpha
Helix 57	AG3	D	237	253	Right-handed alpha
Helix 58	AG4	D	254	258	Right-handed 310
Helix 59	AG5	D	260	269	Right-handed alpha
Helix 60	AG6	D	273	277	Right-handed 310
Helix 61	AG7	E	13	26	Right-handed alpha
Helix 62	AG8	E	36	57	Right-handed alpha
Helix 63	AG9	E	61	71	Right-handed alpha
Helix 64	AH1	E	77	82	Right-handed 310
Helix 65	AH2	E	94	109	Right-handed alpha
Helix 66	AH3	E	123	132	Right-handed alpha
Helix 67	AH4	E	133	135	Right-handed 310
Helix 68	AH5	E	161	175	Right-handed alpha
Helix 69	AH6	E	189	207	Right-handed alpha
Helix 70	AH7	E	211	224	Right-handed alpha
Helix 71	AH8	E	228	237	Right-handed alpha
Helix 72	AH9	E	237	253	Right-handed alpha
Helix 73	AI1	E	254	258	Right-handed 310
Helix 74	AI2	E	260	269	Right-handed alpha
Helix 75	AI3	E	273	277	Right-handed 310
Helix 76	AI4	F	13	26	Right-handed alpha
Helix 77	AI5	F	36	57	Right-handed alpha
Helix 78	AI6	F	61	71	Right-handed alpha
Helix 79	AI7	F	77	82	Right-handed 310
Helix 80	AI8	F	94	109	Right-handed alpha
Helix 81	AI9	F	123	132	Right-handed alpha
Helix 82	AJ1	F	133	135	Right-handed 310
Helix 83	AJ2	F	161	175	Right-handed alpha
Helix 84	AJ3	F	189	207	Right-handed alpha
Helix 85	AJ4	F	211	224	Right-handed alpha
Helix 86	AJ5	F	228	237	Right-handed alpha
Helix 87	AJ6	F	237	253	Right-handed alpha
Helix 88	AJ7	F	254	258	Right-handed 310
Helix 89	AJ8	F	260	269	Right-handed alpha
Helix 90	AJ9	F	273	277	Right-handed 310

There are 7 sheets in PDB entry 9FBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	29	33	parallel
Strand 3	A	6	10	parallel
Strand 4	A	86	89	parallel
Strand 5	A	114	117	parallel
Strand 6	A	137	142	parallel
Strand 7	A	151	156	anti-parallel
Strand 8	A	178	183	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	29	33	parallel
Strand 3	B	6	10	parallel
Strand 4	B	86	89	parallel
Strand 5	B	114	117	parallel
Strand 6	B	137	142	parallel
Strand 7	B	151	156	anti-parallel
Strand 8	B	178	183	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	29	33	parallel
Strand 3	C	6	10	parallel
Strand 4	C	86	89	parallel
Strand 5	C	114	117	parallel
Strand 6	C	137	142	parallel
Strand 7	C	151	156	anti-parallel
Strand 8	C	178	183	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	287	289	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	29	33	parallel
Strand 3	D	6	10	parallel
Strand 4	D	86	89	parallel
Strand 5	D	114	117	parallel
Strand 6	D	137	142	parallel
Strand 7	D	151	156	anti-parallel
Strand 8	D	178	183	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	75	first strand
Strand 2	E	29	33	parallel
Strand 3	E	6	10	parallel
Strand 4	E	86	89	parallel
Strand 5	E	114	117	parallel
Strand 6	E	137	142	parallel
Strand 7	E	151	156	anti-parallel
Strand 8	E	178	183	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	29	33	parallel
Strand 3	F	6	10	parallel
Strand 4	F	86	89	parallel
Strand 5	F	114	117	parallel
Strand 6	F	137	142	parallel
Strand 7	F	151	156	anti-parallel
Strand 8	F	178	183	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FBD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FBD