Analysis of interatomic Contacts of Structural Units in PDB entry:
9FC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FC1 entry

There are 6 chains in PDB entry 9FC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	LEU 312
B	GLU 7	LEU 312
C	GLU 7	LEU 312
D	PRO 8	ASP 311
E	PRO 8	LEU 312
F	PRO 8	SER 313

There are 72 helices in PDB entry 9FC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	52	Right-handed alpha
Helix 2	AA2	A	53	55	Right-handed 310
Helix 3	AA3	A	67	75	Right-handed alpha
Helix 4	AA4	A	111	126	Right-handed alpha
Helix 5	AA5	A	158	167	Right-handed alpha
Helix 6	AA6	A	172	176	Right-handed 310
Helix 7	AA7	A	189	195	Right-handed alpha
Helix 8	AA8	A	197	206	Right-handed alpha
Helix 9	AA9	A	224	229	Right-handed alpha
Helix 10	AB1	A	266	280	Right-handed alpha
Helix 11	AB2	A	287	291	Right-handed 310
Helix 12	AB3	A	305	311	Right-handed alpha
Helix 13	AB4	B	32	52	Right-handed alpha
Helix 14	AB5	B	53	55	Right-handed 310
Helix 15	AB6	B	67	75	Right-handed alpha
Helix 16	AB7	B	111	127	Right-handed alpha
Helix 17	AB8	B	158	167	Right-handed alpha
Helix 18	AB9	B	172	176	Right-handed 310
Helix 19	AC1	B	189	196	Right-handed alpha
Helix 20	AC2	B	197	206	Right-handed alpha
Helix 21	AC3	B	224	229	Right-handed alpha
Helix 22	AC4	B	266	280	Right-handed alpha
Helix 23	AC5	B	287	291	Right-handed 310
Helix 24	AC6	B	305	311	Right-handed alpha
Helix 25	AC7	C	32	52	Right-handed alpha
Helix 26	AC8	C	53	55	Right-handed 310
Helix 27	AC9	C	67	75	Right-handed alpha
Helix 28	AD1	C	111	127	Right-handed alpha
Helix 29	AD2	C	158	167	Right-handed alpha
Helix 30	AD3	C	172	176	Right-handed 310
Helix 31	AD4	C	189	195	Right-handed alpha
Helix 32	AD5	C	197	206	Right-handed alpha
Helix 33	AD6	C	224	230	Right-handed alpha
Helix 34	AD7	C	266	280	Right-handed alpha
Helix 35	AD8	C	287	291	Right-handed 310
Helix 36	AD9	C	305	311	Right-handed alpha
Helix 37	AE1	D	32	52	Right-handed alpha
Helix 38	AE2	D	53	55	Right-handed 310
Helix 39	AE3	D	67	75	Right-handed alpha
Helix 40	AE4	D	111	127	Right-handed alpha
Helix 41	AE5	D	158	167	Right-handed alpha
Helix 42	AE6	D	172	176	Right-handed 310
Helix 43	AE7	D	189	195	Right-handed alpha
Helix 44	AE8	D	197	206	Right-handed alpha
Helix 45	AE9	D	224	229	Right-handed alpha
Helix 46	AF1	D	266	280	Right-handed alpha
Helix 47	AF2	D	287	291	Right-handed 310
Helix 48	AF3	D	305	311	Right-handed alpha
Helix 49	AF4	E	32	52	Right-handed alpha
Helix 50	AF5	E	53	55	Right-handed 310
Helix 51	AF6	E	67	75	Right-handed alpha
Helix 52	AF7	E	111	127	Right-handed alpha
Helix 53	AF8	E	158	167	Right-handed alpha
Helix 54	AF9	E	172	176	Right-handed 310
Helix 55	AG1	E	189	195	Right-handed alpha
Helix 56	AG2	E	197	206	Right-handed alpha
Helix 57	AG3	E	224	229	Right-handed alpha
Helix 58	AG4	E	266	280	Right-handed alpha
Helix 59	AG5	E	287	291	Right-handed 310
Helix 60	AG6	E	305	311	Right-handed alpha
Helix 61	AG7	F	32	52	Right-handed alpha
Helix 62	AG8	F	53	55	Right-handed 310
Helix 63	AG9	F	67	75	Right-handed alpha
Helix 64	AH1	F	111	127	Right-handed alpha
Helix 65	AH2	F	158	167	Right-handed alpha
Helix 66	AH3	F	172	176	Right-handed 310
Helix 67	AH4	F	189	195	Right-handed alpha
Helix 68	AH5	F	197	206	Right-handed alpha
Helix 69	AH6	F	224	229	Right-handed alpha
Helix 70	AH7	F	266	280	Right-handed alpha
Helix 71	AH8	F	287	291	Right-handed 310
Helix 72	AH9	F	305	311	Right-handed alpha

There are 30 sheets in PDB entry 9FC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	103	109	anti-parallel
Strand 3	A	20	28	anti-parallel
Strand 4	A	130	139	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	95	96	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	255	264	anti-parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	293	295	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	250	first strand
Strand 2	A	255	264	anti-parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	299	303	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	238	239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	103	109	anti-parallel
Strand 3	B	20	28	anti-parallel
Strand 4	B	130	139	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	95	96	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	255	264	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	293	295	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	250	first strand
Strand 2	B	255	264	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	299	303	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	238	239	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	66	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	20	28	anti-parallel
Strand 4	C	130	139	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	C	95	96	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	255	264	anti-parallel
Strand 3	C	179	188	anti-parallel
Strand 4	C	293	295	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	250	first strand
Strand 2	C	255	264	anti-parallel
Strand 3	C	179	188	anti-parallel
Strand 4	C	299	303	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	238	239	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	66	first strand
Strand 2	D	103	109	anti-parallel
Strand 3	D	20	28	anti-parallel
Strand 4	D	130	139	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	95	96	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	255	264	anti-parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	293	295	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	250	first strand
Strand 2	D	255	264	anti-parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	299	303	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	238	239	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	66	first strand
Strand 2	E	103	109	anti-parallel
Strand 3	E	20	28	anti-parallel
Strand 4	E	130	139	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	90	first strand
Strand 2	E	95	96	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	243	first strand
Strand 2	E	255	264	anti-parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	293	295	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	250	first strand
Strand 2	E	255	264	anti-parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	299	303	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	231	232	first strand
Strand 2	E	238	239	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	66	first strand
Strand 2	F	103	109	anti-parallel
Strand 3	F	20	28	anti-parallel
Strand 4	F	130	139	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	95	96	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	243	first strand
Strand 2	F	255	264	anti-parallel
Strand 3	F	179	188	anti-parallel
Strand 4	F	293	295	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	250	first strand
Strand 2	F	255	264	anti-parallel
Strand 3	F	179	188	anti-parallel
Strand 4	F	299	303	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	232	first strand
Strand 2	F	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FC1