Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FDA entry

There are 24 chains in PDB entry 9FDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 2	LYS 206
E	LEU 11	LEU 165
F	ARG 2	MET 102
H	SER 2	ALA 130
I	ALA 2	SER 71
J	GLU 76	LYS 177
K	LYS 14	HIS 118
K	GLY 130	VAL 139
L	ALA 2	LYS 88
L	LEU 90	PRO 122
O	SER 2	ARG 89
P	MET 1	LYS 80
Q	ILE 5	ALA 82
R	CYS 11	HIS 74
T	ALA 2	LYS 85
U	PRO 2	ARG 66
B	A 1	G 515
B	G 517	C 526
B	C 528	G 1401
B	C 1403	U 1406
B	A 1408	G 1497
B	A 1499	G 1515
B	G 1517	G 1517
B	C 1520	A 1534

There are 50 helices in PDB entry 9FDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	7	16	Right-handed alpha
Helix 2	AA2	D	27	31	Right-handed 310
Helix 3	AA3	D	49	66	Right-handed alpha
Helix 4	AA4	D	68	82	Right-handed alpha
Helix 5	AA5	D	85	97	Right-handed alpha
Helix 6	AA6	D	97	106	Right-handed alpha
Helix 7	AA7	D	110	120	Right-handed alpha
Helix 8	AA8	D	147	150	Right-handed 310
Helix 9	AA9	D	152	165	Right-handed alpha
Helix 10	AB1	D	196	206	Right-handed alpha
Helix 11	AB2	E	55	70	Right-handed alpha
Helix 12	AB3	E	109	119	Right-handed alpha
Helix 13	AB4	E	132	146	Right-handed alpha
Helix 14	AB5	E	149	158	Right-handed alpha
Helix 15	AB6	E	160	165	Right-handed alpha
Helix 16	AB7	F	12	15	Right-handed 310
Helix 17	AB8	F	17	31	Right-handed alpha
Helix 18	AB9	F	67	81	Right-handed alpha
Helix 19	AC1	H	5	20	Right-handed alpha
Helix 20	AC2	H	30	43	Right-handed alpha
Helix 21	AC3	H	88	92	Right-handed 310
Helix 22	AC4	H	95	99	Right-handed 310
Helix 23	AC5	H	113	120	Right-handed alpha
Helix 24	AC6	I	37	43	Right-handed alpha
Helix 25	AC7	J	78	87	Right-handed alpha
Helix 26	AC8	J	103	120	Right-handed alpha
Helix 27	AC9	J	133	136	Right-handed 310
Helix 28	AD1	J	137	152	Right-handed alpha
Helix 29	AD2	K	59	72	Right-handed alpha
Helix 30	AD3	K	93	103	Right-handed alpha
Helix 31	AD4	L	3	10	Right-handed alpha
Helix 32	AD5	L	21	25	Right-handed 310
Helix 33	AD6	L	113	117	Right-handed 310
Helix 34	AD7	O	4	16	Right-handed alpha
Helix 35	AD8	O	24	46	Right-handed alpha
Helix 36	AD9	O	49	74	Right-handed alpha
Helix 37	AE1	O	74	86	Right-handed alpha
Helix 38	AE2	P	53	63	Right-handed alpha
Helix 39	AE3	P	68	79	Right-handed alpha
Helix 40	AE4	R	12	17	Right-handed alpha
Helix 41	AE5	R	25	30	Right-handed alpha
Helix 42	AE6	R	31	33	Right-handed 310
Helix 43	AE7	R	41	46	Right-handed alpha
Helix 44	AE8	R	48	65	Right-handed alpha
Helix 45	AE9	T	4	42	Right-handed alpha
Helix 46	AF1	T	43	64	Right-handed alpha
Helix 47	AF2	T	68	84	Right-handed alpha
Helix 48	AF3	U	11	27	Right-handed alpha
Helix 49	AF4	U	27	35	Right-handed alpha
Helix 50	AF5	U	40	64	Right-handed alpha

There are 14 sheets in PDB entry 9FDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	123	125	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	179	182	anti-parallel
Strand 5	D	171	174	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	24	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	E	45	53	anti-parallel
Strand 4	E	72	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	92	98	anti-parallel
Strand 3	E	123	129	anti-parallel
Strand 4	E	105	106	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	51	first strand
Strand 2	F	54	65	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	84	91	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	28	first strand
Strand 2	H	58	62	anti-parallel
Strand 3	H	48	52	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	66	first strand
Strand 2	H	69	70	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	77	first strand
Strand 2	H	123	129	anti-parallel
Strand 3	H	86	87	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	77	first strand
Strand 2	H	123	129	anti-parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	109	112	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	17	first strand
Strand 2	I	21	26	anti-parallel
Strand 3	I	31	36	anti-parallel
Strand 4	I	61	71	parallel
Strand 5	I	52	58	anti-parallel
Strand 6	I	8	17	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	93	98	first strand
Strand 2	J	123	129	parallel
Strand 3	J	169	176	anti-parallel
Strand 4	J	156	158	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	46	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	18	25	anti-parallel
Strand 4	K	81	87	parallel
Strand 5	K	106	112	parallel
Strand 6	U	3	5	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	40	first strand
Strand 2	L	50	57	anti-parallel
Strand 3	L	62	66	anti-parallel
Strand 4	L	95	97	parallel
Strand 5	L	79	84	anti-parallel
Strand 6	L	30	40	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	50	52	first strand
Strand 2	P	34	39	anti-parallel
Strand 3	P	14	23	anti-parallel
Strand 4	P	2	11	anti-parallel
Strand 5	P	66	67	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	9	first strand
Strand 2	Q	58	63	anti-parallel
Strand 3	Q	71	80	anti-parallel
Strand 4	Q	37	47	parallel
Strand 5	Q	20	30	anti-parallel
Strand 6	Q	12	17	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDA