Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FDD entry

There are 8 chains in PDB entry 9FDD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 324
B	MET 1	LYS 324
C	MET 1	LYS 324
D	MET 1	LYS 324
E	MET 1	LYS 324
F	MET 1	LYS 324
G	MET 1	LYS 324
H	MET 1	LYS 324

There are129 helices in PDB entry 9FDD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	18	26	Right-handed alpha
Helix 3	AA3	A	29	45	Right-handed alpha
Helix 4	AA4	A	60	89	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	108	119	Right-handed alpha
Helix 7	AA7	A	130	141	Right-handed alpha
Helix 8	AA8	A	151	156	Right-handed 310
Helix 9	AA9	A	185	191	Right-handed alpha
Helix 10	AB1	A	205	214	Right-handed alpha
Helix 11	AB2	A	226	235	Right-handed alpha
Helix 12	AB3	A	246	248	Right-handed 310
Helix 13	AB4	A	281	292	Right-handed alpha
Helix 14	AB5	A	296	306	Right-handed alpha
Helix 15	AB6	A	308	315	Right-handed alpha
Helix 16	AB7	B	2	15	Right-handed alpha
Helix 17	AB8	B	18	26	Right-handed alpha
Helix 18	AB9	B	29	45	Right-handed alpha
Helix 19	AC1	B	60	83	Right-handed alpha
Helix 20	AC2	B	85	89	Right-handed 310
Helix 21	AC3	B	100	106	Right-handed alpha
Helix 22	AC4	B	110	119	Right-handed alpha
Helix 23	AC5	B	130	140	Right-handed alpha
Helix 24	AC6	B	151	156	Right-handed 310
Helix 25	AC7	B	176	180	Right-handed 310
Helix 26	AC8	B	185	190	Right-handed alpha
Helix 27	AC9	B	205	214	Right-handed alpha
Helix 28	AD1	B	226	234	Right-handed alpha
Helix 29	AD2	B	246	248	Right-handed 310
Helix 30	AD3	B	281	292	Right-handed alpha
Helix 31	AD4	B	296	305	Right-handed alpha
Helix 32	AD5	B	308	317	Right-handed alpha
Helix 33	AD6	C	2	15	Right-handed alpha
Helix 34	AD7	C	18	27	Right-handed alpha
Helix 35	AD8	C	29	45	Right-handed alpha
Helix 36	AD9	C	60	89	Right-handed alpha
Helix 37	AE1	C	100	107	Right-handed alpha
Helix 38	AE2	C	108	119	Right-handed alpha
Helix 39	AE3	C	130	140	Right-handed alpha
Helix 40	AE4	C	151	156	Right-handed 310
Helix 41	AE5	C	176	181	Right-handed 310
Helix 42	AE6	C	185	190	Right-handed alpha
Helix 43	AE7	C	205	214	Right-handed alpha
Helix 44	AE8	C	226	235	Right-handed alpha
Helix 45	AE9	C	246	248	Right-handed 310
Helix 46	AF1	C	281	292	Right-handed alpha
Helix 47	AF2	C	296	306	Right-handed alpha
Helix 48	AF3	C	308	315	Right-handed alpha
Helix 49	AF4	D	2	15	Right-handed alpha
Helix 50	AF5	D	18	26	Right-handed alpha
Helix 51	AF6	D	29	45	Right-handed alpha
Helix 52	AF7	D	60	82	Right-handed alpha
Helix 53	AF8	D	85	89	Right-handed 310
Helix 54	AF9	D	100	107	Right-handed alpha
Helix 55	AG1	D	108	119	Right-handed alpha
Helix 56	AG2	D	130	141	Right-handed alpha
Helix 57	AG3	D	151	156	Right-handed 310
Helix 58	AG4	D	176	181	Right-handed 310
Helix 59	AG5	D	185	191	Right-handed alpha
Helix 60	AG6	D	205	213	Right-handed alpha
Helix 61	AG7	D	226	234	Right-handed alpha
Helix 62	AG8	D	246	248	Right-handed 310
Helix 63	AG9	D	281	292	Right-handed alpha
Helix 64	AH1	D	296	306	Right-handed alpha
Helix 65	AH2	D	308	315	Right-handed alpha
Helix 66	AH3	E	2	15	Right-handed alpha
Helix 67	AH4	E	18	26	Right-handed alpha
Helix 68	AH5	E	29	45	Right-handed alpha
Helix 69	AH6	E	60	89	Right-handed alpha
Helix 70	AH7	E	100	107	Right-handed alpha
Helix 71	AH8	E	108	119	Right-handed alpha
Helix 72	AH9	E	130	141	Right-handed alpha
Helix 73	AI1	E	151	156	Right-handed 310
Helix 74	AI2	E	176	181	Right-handed 310
Helix 75	AI3	E	185	191	Right-handed alpha
Helix 76	AI4	E	205	214	Right-handed alpha
Helix 77	AI5	E	226	235	Right-handed alpha
Helix 78	AI6	E	246	248	Right-handed 310
Helix 79	AI7	E	281	292	Right-handed alpha
Helix 80	AI8	E	296	306	Right-handed alpha
Helix 81	AI9	E	308	315	Right-handed alpha
Helix 82	AJ1	F	2	15	Right-handed alpha
Helix 83	AJ2	F	18	26	Right-handed alpha
Helix 84	AJ3	F	29	45	Right-handed alpha
Helix 85	AJ4	F	60	82	Right-handed alpha
Helix 86	AJ5	F	85	89	Right-handed 310
Helix 87	AJ6	F	100	108	Right-handed alpha
Helix 88	AJ7	F	109	119	Right-handed alpha
Helix 89	AJ8	F	130	140	Right-handed alpha
Helix 90	AJ9	F	151	156	Right-handed 310
Helix 91	AK1	F	185	191	Right-handed alpha
Helix 92	AK2	F	205	213	Right-handed alpha
Helix 93	AK3	F	226	235	Right-handed alpha
Helix 94	AK4	F	246	248	Right-handed 310
Helix 95	AK5	F	281	292	Right-handed alpha
Helix 96	AK6	F	296	306	Right-handed alpha
Helix 97	AK7	F	308	316	Right-handed alpha
Helix 98	AK8	G	2	15	Right-handed alpha
Helix 99	AK9	G	18	26	Right-handed alpha
Helix 100	AL1	G	29	45	Right-handed alpha
Helix 101	AL2	G	60	89	Right-handed alpha
Helix 102	AL3	G	100	108	Right-handed alpha
Helix 103	AL4	G	108	119	Right-handed alpha
Helix 104	AL5	G	130	140	Right-handed alpha
Helix 105	AL6	G	151	156	Right-handed 310
Helix 106	AL7	G	185	191	Right-handed alpha
Helix 107	AL8	G	205	214	Right-handed alpha
Helix 108	AL9	G	226	235	Right-handed alpha
Helix 109	AM1	G	246	248	Right-handed 310
Helix 110	AM2	G	281	292	Right-handed alpha
Helix 111	AM3	G	296	306	Right-handed alpha
Helix 112	AM4	G	308	315	Right-handed alpha
Helix 113	AM5	H	2	15	Right-handed alpha
Helix 114	AM6	H	18	26	Right-handed alpha
Helix 115	AM7	H	29	45	Right-handed alpha
Helix 116	AM8	H	60	83	Right-handed alpha
Helix 117	AM9	H	85	89	Right-handed 310
Helix 118	AN1	H	100	106	Right-handed alpha
Helix 119	AN2	H	108	119	Right-handed alpha
Helix 120	AN3	H	130	141	Right-handed alpha
Helix 121	AN4	H	151	156	Right-handed 310
Helix 122	AN5	H	176	180	Right-handed 310
Helix 123	AN6	H	185	190	Right-handed alpha
Helix 124	AN7	H	205	215	Right-handed alpha
Helix 125	AN8	H	226	235	Right-handed alpha
Helix 126	AN9	H	246	248	Right-handed 310
Helix 127	AO1	H	281	292	Right-handed alpha
Helix 128	AO2	H	296	305	Right-handed alpha
Helix 129	AO3	H	308	317	Right-handed alpha

There are 16 sheets in PDB entry 9FDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	56	59	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	166	first strand
Strand 2	A	268	274	anti-parallel
Strand 3	A	145	148	anti-parallel
Strand 4	A	93	99	parallel
Strand 5	A	122	128	parallel
Strand 6	B	220	224	parallel
Strand 7	B	194	197	parallel
Strand 8	B	240	244	parallel
Strand 9	B	168	172	anti-parallel
Strand 10	B	257	260	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	168	172	anti-parallel
Strand 3	A	240	244	anti-parallel
Strand 4	A	193	197	parallel
Strand 5	A	219	224	parallel
Strand 6	B	123	127	parallel
Strand 7	B	94	98	parallel
Strand 8	B	145	148	parallel
Strand 9	B	268	274	anti-parallel
Strand 10	B	159	166	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	55	59	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	56	59	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	166	first strand
Strand 2	C	268	274	anti-parallel
Strand 3	C	145	148	anti-parallel
Strand 4	C	93	99	parallel
Strand 5	C	122	128	parallel
Strand 6	D	220	224	parallel
Strand 7	D	194	197	parallel
Strand 8	D	240	244	parallel
Strand 9	D	168	172	anti-parallel
Strand 10	D	257	260	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	240	244	anti-parallel
Strand 4	C	193	197	parallel
Strand 5	C	219	224	parallel
Strand 6	D	123	127	parallel
Strand 7	D	94	98	parallel
Strand 8	D	145	148	parallel
Strand 9	D	268	274	anti-parallel
Strand 10	D	159	166	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	55	59	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	56	59	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	166	first strand
Strand 2	E	268	274	anti-parallel
Strand 3	E	145	148	anti-parallel
Strand 4	E	92	99	parallel
Strand 5	E	121	128	parallel
Strand 6	F	219	224	parallel
Strand 7	F	193	197	parallel
Strand 8	F	240	244	parallel
Strand 9	F	168	172	anti-parallel
Strand 10	F	257	260	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	260	first strand
Strand 2	E	168	172	anti-parallel
Strand 3	E	240	244	anti-parallel
Strand 4	E	193	197	parallel
Strand 5	E	219	224	parallel
Strand 6	F	123	128	parallel
Strand 7	F	94	99	parallel
Strand 8	F	145	148	parallel
Strand 9	F	268	274	anti-parallel
Strand 10	F	161	166	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	55	59	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	52	first strand
Strand 2	G	55	59	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	166	first strand
Strand 2	G	268	274	anti-parallel
Strand 3	G	145	148	anti-parallel
Strand 4	G	92	99	parallel
Strand 5	G	121	128	parallel
Strand 6	H	220	224	parallel
Strand 7	H	194	197	parallel
Strand 8	H	240	244	parallel
Strand 9	H	168	172	anti-parallel
Strand 10	H	257	260	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	257	259	first strand
Strand 2	G	168	172	anti-parallel
Strand 3	G	240	244	anti-parallel
Strand 4	G	193	197	parallel
Strand 5	G	219	224	parallel
Strand 6	H	122	128	parallel
Strand 7	H	93	99	parallel
Strand 8	H	145	148	parallel
Strand 9	H	268	274	anti-parallel
Strand 10	H	159	166	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	52	first strand
Strand 2	H	55	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FDD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDD