Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FDQ entry

There is 1 chain in PDB entry 9FDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1PHE 1033
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9FDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1 7Right-handed alpha
Helix 2
AA2
C
8 28Right-handed alpha
Helix 3
AA3
C
53 61Right-handed alpha
Helix 4
AA4
C
61 68Right-handed alpha
Helix 5
AA5
C
99 112Right-handed alpha
Helix 6
AA6
C
119 126Right-handed alpha
Helix 7
AA7
C
150 162Right-handed alpha
Helix 8
AA8
C
162 168Right-handed alpha
Helix 9
AA9
C
189 196Right-handed alpha
Helix 10
AB1
C
199 211Right-handed alpha
Helix 11
AB2
C
242 247Right-handed alpha
Helix 12
AB3
C
298 314Right-handed alpha
Helix 13
AB4
C
315 317Right-handed 310
Helix 14
AB5
C
329 358Right-handed alpha
Helix 15
AB6
C
361 367Right-handed alpha
Helix 16
AB7
C
370 387Right-handed alpha
Helix 17
AB8
C
391 406Right-handed alpha
Helix 18
AB9
C
406 424Right-handed alpha
Helix 19
AC1
C
426 435Right-handed alpha
Helix 20
AC2
C
438 454Right-handed alpha
Helix 21
AC3
C
455 459Right-handed 310
Helix 22
AC4
C
460 488Right-handed alpha
Helix 23
AC5
C
488 497Right-handed alpha
Helix 24
AC6
C
511 535Right-handed alpha
Helix 25
AC7
C
538 559Right-handed alpha
Helix 26
AC8
C
583 599Right-handed alpha
Helix 27
AC9
C
633 637Right-handed 310
Helix 28
AD1
C
643 656Right-handed alpha
Helix 29
AD2
C
691 707Right-handed alpha
Helix 30
AD3
C
732 740Right-handed alpha
Helix 31
AD4
C
742 755Right-handed alpha
Helix 32
AD5
C
777 780Right-handed 310
Helix 33
AD6
C
782 788Right-handed 310
Helix 34
AD7
C
836 849Right-handed alpha
Helix 35
AD8
C
861 872Right-handed alpha
Helix 36
AD9
C
872 892Right-handed alpha
Helix 37
AE1
C
895 903Right-handed alpha
Helix 38
AE2
C
904 920Right-handed alpha
Helix 39
AE3
C
924 955Right-handed alpha
Helix 40
AE4
C
959 986Right-handed alpha
Helix 41
AE5
C
986 992Right-handed alpha
Helix 42
AE6
C
996 1017Right-handed alpha
Helix 43
AE7
C
1017 1033Right-handed alpha
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There are 8 sheets in PDB entry 9FDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
42 47anti-parallel
Strand 3
C
88 94anti-parallel
Strand 4
C
75 83anti-parallel
Strand 5
C
815 819anti-parallel
Strand 6
C
822 831anti-parallel
Strand 7
C
713 718anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
42 47anti-parallel
Strand 3
C
88 94anti-parallel
Strand 4
C
75 83anti-parallel
Strand 5
C
815 819anti-parallel
Strand 6
C
822 831anti-parallel
Strand 7
C
681 686anti-parallel
Strand 8
C
855 859anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 177first strand
Strand 2
C
284 293anti-parallel
Strand 3
C
138 144anti-parallel
Strand 4
C
321 328anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 177first strand
Strand 2
C
284 293anti-parallel
Strand 3
C
278 281anti-parallel
Strand 4
C
606 613anti-parallel
Strand 5
C
624 631anti-parallel
Strand 6
C
571 577anti-parallel
Strand 7
C
662 667anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 271first strand
Strand 2
C
183 188anti-parallel
Strand 3
C
767 775parallel
Strand 4
C
757 764anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 253first strand
Strand 2
C
259 261anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
724 731first strand
Strand 2
C
805 812anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
790 792first strand
Strand 2
C
798 800anti-parallel
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