Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FDS entry

There is 1 chain in PDB entry 9FDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 56SER 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9FDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 73Right-handed alpha
Helix 2
AA2
A
85 92Right-handed 310
Helix 3
AA3
A
106 111Right-handed 310
Helix 4
AA4
A
114 119Right-handed 310
Helix 5
AA5
A
120 127Right-handed alpha
Helix 6
AA6
A
128 139Right-handed alpha
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
171 176Right-handed alpha
Helix 9
AA9
A
179 181Right-handed 310
Helix 10
AB1
A
206 216Right-handed alpha
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
269 276Right-handed 310
Helix 13
AB4
A
323 336Right-handed alpha
Helix 14
AB5
A
337 354Right-handed alpha
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There are 2 sheets in PDB entry 9FDS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
161 166parallel
Strand 3
A
79 83parallel
Strand 4
A
256 260parallel
Strand 5
A
282 286parallel
Strand 6
A
317 321parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
188 195anti-parallel
Strand 3
A
228 232anti-parallel
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