Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FDY entry

There are 5 chains in PDB entry 9FDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 112
B
 ALA 1SER 112
C
 CYS 4ASN 333
D
 PHE 10TYR 116
E
 VAL 8TYR 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 9FDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
B
4 10Right-handed alpha
Helix 4
AA4
B
56 69Right-handed alpha
Helix 5
AA5
C
117 120Right-handed 310
Helix 6
AA6
C
132 145Right-handed alpha
Helix 7
AA7
C
280 284Right-handed 310
Helix 8
AA8
C
299 311Right-handed alpha
Helix 9
AA9
D
76 81Right-handed 310
Helix 10
AB1
E
70 74Right-handed 310
Helix 11
AB2
E
105 107Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 9FDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
43 45anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
38 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 112first strand
Strand 2
A
77 92anti-parallel
Strand 3
D
37 39parallel
Strand 4
D
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
95 112anti-parallel
Strand 3
B
77 92anti-parallel
Strand 4
E
37 39parallel
Strand 5
E
13 15anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
43 45anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
38 40anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
195 198anti-parallel
Strand 3
C
317 323anti-parallel
Strand 4
C
206 215parallel
Strand 5
C
241 251parallel
Strand 6
C
264 271parallel
Strand 7
C
287 291parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
58 65parallel
Strand 3
C
87 88parallel
Strand 4
C
110 111parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
58 65parallel
Strand 3
C
158 163parallel
Strand 4
C
185 192anti-parallel
Strand 5
C
15 23anti-parallel
Strand 6
C
326 331anti-parallel
Strand 7
C
229 234parallel
Strand 8
C
256 261parallel
Strand 9
C
275 278parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
149 154anti-parallel
Strand 3
C
39 46parallel
Strand 4
C
76 81parallel
Strand 5
C
101 106parallel
Strand 6
C
122 127parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 20first strand
Strand 2
D
60 65anti-parallel
Strand 3
D
46 51anti-parallel
Strand 4
D
96 101anti-parallel
Strand 5
D
87 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 31first strand
Strand 2
D
109 111anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
58 65anti-parallel
Strand 3
E
46 53anti-parallel
Strand 4
E
95 101anti-parallel
Strand 5
E
87 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 31first strand
Strand 2
E
109 111anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il