Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FDZ entry

There are 3 chains in PDB entry 9FDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 1040
B	MET 1	ARG 1040
C	MET 1	ARG 1040

There are114 helices in PDB entry 9FDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	10	29	Right-handed alpha
Helix 3	AA3	A	55	63	Right-handed alpha
Helix 4	AA4	A	63	72	Right-handed alpha
Helix 5	AA5	A	101	116	Right-handed alpha
Helix 6	AA6	A	121	128	Right-handed alpha
Helix 7	AA7	A	152	164	Right-handed alpha
Helix 8	AA8	A	164	170	Right-handed alpha
Helix 9	AA9	A	192	199	Right-handed alpha
Helix 10	AB1	A	202	214	Right-handed alpha
Helix 11	AB2	A	245	251	Right-handed alpha
Helix 12	AB3	A	301	319	Right-handed alpha
Helix 13	AB4	A	331	363	Right-handed alpha
Helix 14	AB5	A	364	390	Right-handed alpha
Helix 15	AB6	A	396	409	Right-handed alpha
Helix 16	AB7	A	409	425	Right-handed alpha
Helix 17	AB8	A	428	460	Right-handed alpha
Helix 18	AB9	A	462	499	Right-handed alpha
Helix 19	AC1	A	507	544	Right-handed alpha
Helix 20	AC2	A	545	567	Right-handed alpha
Helix 21	AC3	A	591	608	Right-handed alpha
Helix 22	AC4	A	641	645	Right-handed 310
Helix 23	AC5	A	648	661	Right-handed alpha
Helix 24	AC6	A	696	714	Right-handed alpha
Helix 25	AC7	A	736	744	Right-handed alpha
Helix 26	AC8	A	746	758	Right-handed alpha
Helix 27	AC9	A	781	785	Right-handed 310
Helix 28	AD1	A	786	792	Right-handed alpha
Helix 29	AD2	A	841	857	Right-handed alpha
Helix 30	AD3	A	866	875	Right-handed alpha
Helix 31	AD4	A	878	899	Right-handed alpha
Helix 32	AD5	A	904	909	Right-handed alpha
Helix 33	AD6	A	910	926	Right-handed alpha
Helix 34	AD7	A	930	961	Right-handed alpha
Helix 35	AD8	A	964	996	Right-handed alpha
Helix 36	AD9	A	1001	1039	Right-handed alpha
Helix 37	AE1	B	2	9	Right-handed alpha
Helix 38	AE2	B	10	29	Right-handed alpha
Helix 39	AE3	B	55	63	Right-handed alpha
Helix 40	AE4	B	63	72	Right-handed alpha
Helix 41	AE5	B	101	117	Right-handed alpha
Helix 42	AE6	B	118	120	Right-handed 310
Helix 43	AE7	B	121	128	Right-handed alpha
Helix 44	AE8	B	152	164	Right-handed alpha
Helix 45	AE9	B	164	170	Right-handed alpha
Helix 46	AF1	B	192	199	Right-handed alpha
Helix 47	AF2	B	202	214	Right-handed alpha
Helix 48	AF3	B	245	251	Right-handed alpha
Helix 49	AF4	B	301	319	Right-handed alpha
Helix 50	AF5	B	331	363	Right-handed alpha
Helix 51	AF6	B	364	381	Right-handed alpha
Helix 52	AF7	B	381	390	Right-handed alpha
Helix 53	AF8	B	396	409	Right-handed alpha
Helix 54	AF9	B	409	425	Right-handed alpha
Helix 55	AG1	B	428	460	Right-handed alpha
Helix 56	AG2	B	462	499	Right-handed alpha
Helix 57	AG3	B	507	512	Right-handed alpha
Helix 58	AG4	B	512	517	Right-handed alpha
Helix 59	AG5	B	517	544	Right-handed alpha
Helix 60	AG6	B	545	567	Right-handed alpha
Helix 61	AG7	B	591	608	Right-handed alpha
Helix 62	AG8	B	641	645	Right-handed 310
Helix 63	AG9	B	648	661	Right-handed alpha
Helix 64	AH1	B	696	714	Right-handed alpha
Helix 65	AH2	B	736	744	Right-handed alpha
Helix 66	AH3	B	746	758	Right-handed alpha
Helix 67	AH4	B	781	784	Right-handed 310
Helix 68	AH5	B	786	792	Right-handed alpha
Helix 69	AH6	B	841	857	Right-handed alpha
Helix 70	AH7	B	866	875	Right-handed alpha
Helix 71	AH8	B	878	899	Right-handed alpha
Helix 72	AH9	B	904	909	Right-handed alpha
Helix 73	AI1	B	910	925	Right-handed alpha
Helix 74	AI2	B	930	961	Right-handed alpha
Helix 75	AI3	B	964	996	Right-handed alpha
Helix 76	AI4	B	1001	1040	Right-handed alpha
Helix 77	AI5	C	10	29	Right-handed alpha
Helix 78	AI6	C	55	63	Right-handed alpha
Helix 79	AI7	C	63	72	Right-handed alpha
Helix 80	AI8	C	101	117	Right-handed alpha
Helix 81	AI9	C	121	128	Right-handed alpha
Helix 82	AJ1	C	152	164	Right-handed alpha
Helix 83	AJ2	C	164	170	Right-handed alpha
Helix 84	AJ3	C	192	199	Right-handed alpha
Helix 85	AJ4	C	202	213	Right-handed alpha
Helix 86	AJ5	C	245	251	Right-handed alpha
Helix 87	AJ6	C	301	317	Right-handed alpha
Helix 88	AJ7	C	318	320	Right-handed 310
Helix 89	AJ8	C	331	363	Right-handed alpha
Helix 90	AJ9	C	364	390	Right-handed alpha
Helix 91	AK1	C	396	425	Right-handed alpha
Helix 92	AK2	C	428	456	Right-handed alpha
Helix 93	AK3	C	457	461	Right-handed 310
Helix 94	AK4	C	462	499	Right-handed alpha
Helix 95	AK5	C	507	544	Right-handed alpha
Helix 96	AK6	C	545	567	Right-handed alpha
Helix 97	AK7	C	591	609	Right-handed alpha
Helix 98	AK8	C	641	645	Right-handed 310
Helix 99	AK9	C	648	660	Right-handed alpha
Helix 100	AL1	C	661	663	Right-handed 310
Helix 101	AL2	C	695	714	Right-handed alpha
Helix 102	AL3	C	736	744	Right-handed alpha
Helix 103	AL4	C	746	758	Right-handed alpha
Helix 104	AL5	C	781	785	Right-handed 310
Helix 105	AL6	C	786	792	Right-handed alpha
Helix 106	AL7	C	841	857	Right-handed alpha
Helix 107	AL8	C	866	875	Right-handed alpha
Helix 108	AL9	C	877	899	Right-handed alpha
Helix 109	AM1	C	902	909	Right-handed alpha
Helix 110	AM2	C	910	925	Right-handed alpha
Helix 111	AM3	C	930	961	Right-handed alpha
Helix 112	AM4	C	964	991	Right-handed alpha
Helix 113	AM5	C	991	996	Right-handed alpha
Helix 114	AM6	C	1001	1039	Right-handed alpha

There are 21 sheets in PDB entry 9FDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	77	84	anti-parallel
Strand 5	A	820	823	anti-parallel
Strand 6	A	826	833	anti-parallel
Strand 7	A	685	691	anti-parallel
Strand 8	A	861	865	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	290	296	anti-parallel
Strand 3	A	140	145	anti-parallel
Strand 4	A	325	327	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	274	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	771	779	parallel
Strand 4	A	761	768	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	B	728	735	parallel
Strand 4	B	809	816	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	262	264	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	283	284	anti-parallel
Strand 3	A	612	621	anti-parallel
Strand 4	A	628	639	anti-parallel
Strand 5	A	579	585	anti-parallel
Strand 6	A	667	671	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	816	first strand
Strand 2	A	728	735	anti-parallel
Strand 3	C	235	240	parallel
Strand 4	C	221	222	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	794	796	first strand
Strand 2	A	802	804	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	77	84	anti-parallel
Strand 5	B	820	823	anti-parallel
Strand 6	B	826	833	anti-parallel
Strand 7	B	685	691	anti-parallel
Strand 8	B	861	865	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	290	296	anti-parallel
Strand 3	B	140	145	anti-parallel
Strand 4	B	325	327	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	274	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	771	779	parallel
Strand 4	B	761	768	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	C	728	735	parallel
Strand 4	C	809	816	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	262	264	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	283	284	anti-parallel
Strand 3	B	612	621	anti-parallel
Strand 4	B	628	639	anti-parallel
Strand 5	B	579	585	anti-parallel
Strand 6	B	667	671	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	794	796	first strand
Strand 2	B	802	804	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	44	50	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	77	84	anti-parallel
Strand 5	C	820	823	anti-parallel
Strand 6	C	826	833	anti-parallel
Strand 7	C	685	691	anti-parallel
Strand 8	C	861	865	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	179	first strand
Strand 2	C	290	296	anti-parallel
Strand 3	C	140	145	anti-parallel
Strand 4	C	325	327	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	274	first strand
Strand 2	C	186	191	anti-parallel
Strand 3	C	771	779	parallel
Strand 4	C	761	768	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	256	first strand
Strand 2	C	262	264	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	283	284	anti-parallel
Strand 3	C	612	621	anti-parallel
Strand 4	C	628	639	anti-parallel
Strand 5	C	579	585	anti-parallel
Strand 6	C	667	671	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	794	796	first strand
Strand 2	C	802	804	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FDZ