Analysis of interatomic Contacts of Structural Units in PDB entry:
9FE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FE3 entry

There are 2 chains in PDB entry 9FE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 13ALA 162
A
 MET 1SER 1043
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9FE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
13 24Right-handed alpha
Helix 2
AA2
D
26 36Right-handed alpha
Helix 3
AA3
D
49 58Right-handed alpha
Helix 4
AA4
D
59 69Right-handed alpha
Helix 5
AA5
D
82 90Right-handed alpha
Helix 6
AA6
D
92 102Right-handed alpha
Helix 7
AA7
D
115 124Right-handed alpha
Helix 8
AA8
D
126 135Right-handed alpha
Helix 9
AA9
D
148 157Right-handed alpha
Helix 10
AB1
A
2 7Right-handed alpha
Helix 11
AB2
A
8 30Right-handed alpha
Helix 12
AB3
A
53 61Right-handed alpha
Helix 13
AB4
A
61 67Right-handed alpha
Helix 14
AB5
A
99 114Right-handed alpha
Helix 15
AB6
A
115 118Right-handed 310
Helix 16
AB7
A
119 126Right-handed alpha
Helix 17
AB8
A
150 162Right-handed alpha
Helix 18
AB9
A
162 168Right-handed alpha
Helix 19
AC1
A
189 196Right-handed alpha
Helix 20
AC2
A
199 211Right-handed alpha
Helix 21
AC3
A
242 248Right-handed alpha
Helix 22
AC4
A
298 311Right-handed alpha
Helix 23
AC5
A
313 317Right-handed 310
Helix 24
AC6
A
329 360Right-handed alpha
Helix 25
AC7
A
365 386Right-handed alpha
Helix 26
AC8
A
391 400Right-handed alpha
Helix 27
AC9
A
401 424Right-handed alpha
Helix 28
AD1
A
426 454Right-handed alpha
Helix 29
AD2
A
455 459Right-handed 310
Helix 30
AD3
A
460 497Right-handed alpha
Helix 31
AD4
A
511 537Right-handed alpha
Helix 32
AD5
A
538 559Right-handed alpha
Helix 33
AD6
A
583 602Right-handed alpha
Helix 34
AD7
A
633 637Right-handed 310
Helix 35
AD8
A
639 642Right-handed 310
Helix 36
AD9
A
643 655Right-handed alpha
Helix 37
AE1
A
691 708Right-handed alpha
Helix 38
AE2
A
732 739Right-handed alpha
Helix 39
AE3
A
742 755Right-handed alpha
Helix 40
AE4
A
777 780Right-handed 310
Helix 41
AE5
A
782 788Right-handed 310
Helix 42
AE6
A
836 850Right-handed alpha
Helix 43
AE7
A
860 868Right-handed alpha
Helix 44
AE8
A
871 893Right-handed alpha
Helix 45
AE9
A
897 903Right-handed alpha
Helix 46
AF1
A
904 920Right-handed alpha
Helix 47
AF2
A
924 957Right-handed alpha
Helix 48
AF3
A
959 971Right-handed alpha
Helix 49
AF4
A
971 986Right-handed alpha
Helix 50
AF5
A
986 991Right-handed alpha
Helix 51
AF6
A
996 1033Right-handed alpha
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There are 9 sheets in PDB entry 9FE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
815 819anti-parallel
Strand 6
A
822 831anti-parallel
Strand 7
A
713 718anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
815 819anti-parallel
Strand 6
A
822 831anti-parallel
Strand 7
A
680 686anti-parallel
Strand 8
A
855 859anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
287 293anti-parallel
Strand 3
A
136 144anti-parallel
Strand 4
A
321 328anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 775parallel
Strand 4
A
757 764anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
232 235anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
259 261anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
606 615anti-parallel
Strand 4
A
620 631anti-parallel
Strand 5
A
571 577anti-parallel
Strand 6
A
663 667anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 731first strand
Strand 2
A
805 812anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il