Analysis of interatomic Contacts of Structural Units in PDB entry:
9FE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FE4 entry

There is 1 chain in PDB entry 9FE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ARG 1032

There are 44 helices in PDB entry 9FE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	7	Right-handed alpha
Helix 2	AA2	B	8	30	Right-handed alpha
Helix 3	AA3	B	53	61	Right-handed alpha
Helix 4	AA4	B	61	67	Right-handed alpha
Helix 5	AA5	B	99	112	Right-handed alpha
Helix 6	AA6	B	113	118	Right-handed 310
Helix 7	AA7	B	119	124	Right-handed alpha
Helix 8	AA8	B	150	162	Right-handed alpha
Helix 9	AA9	B	162	168	Right-handed alpha
Helix 10	AB1	B	189	196	Right-handed alpha
Helix 11	AB2	B	199	211	Right-handed alpha
Helix 12	AB3	B	242	248	Right-handed alpha
Helix 13	AB4	B	298	314	Right-handed alpha
Helix 14	AB5	B	315	317	Right-handed 310
Helix 15	AB6	B	329	359	Right-handed alpha
Helix 16	AB7	B	361	366	Right-handed alpha
Helix 17	AB8	B	367	386	Right-handed alpha
Helix 18	AB9	B	391	400	Right-handed alpha
Helix 19	AC1	B	401	424	Right-handed alpha
Helix 20	AC2	B	426	437	Right-handed alpha
Helix 21	AC3	B	439	454	Right-handed alpha
Helix 22	AC4	B	455	459	Right-handed 310
Helix 23	AC5	B	460	485	Right-handed alpha
Helix 24	AC6	B	488	497	Right-handed alpha
Helix 25	AC7	B	511	536	Right-handed alpha
Helix 26	AC8	B	537	542	Right-handed alpha
Helix 27	AC9	B	544	559	Right-handed alpha
Helix 28	AD1	B	583	600	Right-handed alpha
Helix 29	AD2	B	643	656	Right-handed alpha
Helix 30	AD3	B	691	707	Right-handed alpha
Helix 31	AD4	B	732	740	Right-handed alpha
Helix 32	AD5	B	742	756	Right-handed alpha
Helix 33	AD6	B	777	780	Right-handed 310
Helix 34	AD7	B	782	788	Right-handed 310
Helix 35	AD8	B	836	850	Right-handed alpha
Helix 36	AD9	B	861	867	Right-handed alpha
Helix 37	AE1	B	871	893	Right-handed alpha
Helix 38	AE2	B	897	903	Right-handed alpha
Helix 39	AE3	B	904	920	Right-handed alpha
Helix 40	AE4	B	924	955	Right-handed alpha
Helix 41	AE5	B	959	971	Right-handed alpha
Helix 42	AE6	B	971	991	Right-handed alpha
Helix 43	AE7	B	996	1017	Right-handed alpha
Helix 44	AE8	B	1017	1032	Right-handed alpha

There are 9 sheets in PDB entry 9FE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	713	718	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	680	686	anti-parallel
Strand 8	B	855	859	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	328	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	284	289	anti-parallel
Strand 4	B	278	281	anti-parallel
Strand 5	B	606	613	anti-parallel
Strand 6	B	624	631	anti-parallel
Strand 7	B	571	577	anti-parallel
Strand 8	B	662	666	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	292	293	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	767	775	parallel
Strand 4	B	757	764	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	232	235	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	259	261	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	731	first strand
Strand 2	B	805	812	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FE4