Analysis of interatomic Contacts of Structural Units in PDB entry:
9FEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FEE entry

There are 4 chains in PDB entry 9FEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 319
B	MET 1	ALA 319
C	MET 1	PHE 318
D	MET 1	ARG 320

There are 41 helices in PDB entry 9FEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	38	47	Right-handed alpha
Helix 3	AA3	A	69	76	Right-handed alpha
Helix 4	AA4	A	98	116	Right-handed alpha
Helix 5	AA5	A	129	145	Right-handed alpha
Helix 6	AA6	A	156	171	Right-handed alpha
Helix 7	AA7	A	206	225	Right-handed alpha
Helix 8	AA8	A	232	251	Right-handed alpha
Helix 9	AA9	A	294	319	Right-handed alpha
Helix 10	AB1	B	11	25	Right-handed alpha
Helix 11	AB2	B	38	47	Right-handed alpha
Helix 12	AB3	B	69	76	Right-handed alpha
Helix 13	AB4	B	101	118	Right-handed alpha
Helix 14	AB5	B	129	145	Right-handed alpha
Helix 15	AB6	B	148	150	Right-handed 310
Helix 16	AB7	B	156	169	Right-handed alpha
Helix 17	AB8	B	206	216	Right-handed alpha
Helix 18	AB9	B	217	225	Right-handed alpha
Helix 19	AC1	B	231	252	Right-handed alpha
Helix 20	AC2	B	295	319	Right-handed alpha
Helix 21	AC3	C	11	23	Right-handed alpha
Helix 22	AC4	C	38	47	Right-handed alpha
Helix 23	AC5	C	69	76	Right-handed alpha
Helix 24	AC6	C	101	115	Right-handed alpha
Helix 25	AC7	C	129	145	Right-handed alpha
Helix 26	AC8	C	156	171	Right-handed alpha
Helix 27	AC9	C	194	197	Right-handed 310
Helix 28	AD1	C	206	216	Right-handed alpha
Helix 29	AD2	C	216	225	Right-handed alpha
Helix 30	AD3	C	232	251	Right-handed alpha
Helix 31	AD4	C	294	318	Right-handed alpha
Helix 32	AD5	D	11	25	Right-handed alpha
Helix 33	AD6	D	38	47	Right-handed alpha
Helix 34	AD7	D	70	76	Right-handed alpha
Helix 35	AD8	D	100	118	Right-handed alpha
Helix 36	AD9	D	129	145	Right-handed alpha
Helix 37	AE1	D	148	150	Right-handed 310
Helix 38	AE2	D	157	169	Right-handed alpha
Helix 39	AE3	D	206	225	Right-handed alpha
Helix 40	AE4	D	231	252	Right-handed alpha
Helix 41	AE5	D	294	317	Right-handed alpha

There are 12 sheets in PDB entry 9FEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	30	35	parallel
Strand 3	A	3	7	parallel
Strand 4	A	81	84	parallel
Strand 5	A	122	125	parallel
Strand 6	A	152	154	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	190	192	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	275	280	anti-parallel
Strand 3	A	283	287	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	30	34	parallel
Strand 3	B	3	7	parallel
Strand 4	B	81	84	parallel
Strand 5	B	122	125	parallel
Strand 6	B	152	154	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	190	192	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	274	280	anti-parallel
Strand 3	B	283	287	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	30	35	parallel
Strand 3	C	3	7	parallel
Strand 4	C	81	84	parallel
Strand 5	C	122	125	parallel
Strand 6	C	152	154	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	190	192	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	C	274	280	anti-parallel
Strand 3	C	283	287	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	59	first strand
Strand 2	D	30	34	parallel
Strand 3	D	3	7	parallel
Strand 4	D	81	84	parallel
Strand 5	D	122	125	parallel
Strand 6	D	152	154	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	190	192	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	274	279	anti-parallel
Strand 3	D	284	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FEE