Analysis of interatomic Contacts of Structural Units in PDB entry:
9FEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FEF entry

There are 5 chains in PDB entry 9FEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 320
B
 MET 1PHE 318
C
 MET 1SER 321
D
 MET 1ARG 320
E
 MET 363LEU 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9FEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
69 76Right-handed alpha
Helix 4
AA4
A
97 115Right-handed alpha
Helix 5
AA5
A
129 145Right-handed alpha
Helix 6
AA6
A
148 150Right-handed 310
Helix 7
AA7
A
156 171Right-handed alpha
Helix 8
AA8
A
194 197Right-handed 310
Helix 9
AA9
A
206 216Right-handed alpha
Helix 10
AB1
A
216 225Right-handed alpha
Helix 11
AB2
A
232 252Right-handed alpha
Helix 12
AB3
A
294 319Right-handed alpha
Helix 13
AB4
B
11 25Right-handed alpha
Helix 14
AB5
B
38 47Right-handed alpha
Helix 15
AB6
B
69 76Right-handed alpha
Helix 16
AB7
B
100 118Right-handed alpha
Helix 17
AB8
B
129 145Right-handed alpha
Helix 18
AB9
B
148 150Right-handed 310
Helix 19
AC1
B
156 170Right-handed alpha
Helix 20
AC2
B
194 197Right-handed 310
Helix 21
AC3
B
206 216Right-handed alpha
Helix 22
AC4
B
216 225Right-handed alpha
Helix 23
AC5
B
231 251Right-handed alpha
Helix 24
AC6
B
294 318Right-handed alpha
Helix 25
AC7
C
11 23Right-handed alpha
Helix 26
AC8
C
38 47Right-handed alpha
Helix 27
AC9
C
69 76Right-handed alpha
Helix 28
AD1
C
97 116Right-handed alpha
Helix 29
AD2
C
129 145Right-handed alpha
Helix 30
AD3
C
148 150Right-handed 310
Helix 31
AD4
C
157 171Right-handed alpha
Helix 32
AD5
C
206 216Right-handed alpha
Helix 33
AD6
C
216 225Right-handed alpha
Helix 34
AD7
C
233 251Right-handed alpha
Helix 35
AD8
C
294 320Right-handed alpha
Helix 36
AD9
D
11 25Right-handed alpha
Helix 37
AE1
D
38 47Right-handed alpha
Helix 38
AE2
D
69 76Right-handed alpha
Helix 39
AE3
D
97 116Right-handed alpha
Helix 40
AE4
D
129 145Right-handed alpha
Helix 41
AE5
D
156 171Right-handed alpha
Helix 42
AE6
D
194 197Right-handed 310
Helix 43
AE7
D
206 215Right-handed alpha
Helix 44
AE8
D
216 225Right-handed alpha
Helix 45
AE9
D
232 251Right-handed alpha
Helix 46
AF1
D
294 319Right-handed alpha
Helix 47
AF2
E
364 371Right-handed alpha
Helix 48
AF3
E
375 382Right-handed alpha
Helix 49
AF4
E
395 404Right-handed alpha
Helix 50
AF5
E
408 423Right-handed alpha
Helix 51
AF6
E
426 440Right-handed alpha
Helix 52
AF7
E
442 457Right-handed alpha
Helix 53
AF8
E
495 507Right-handed alpha
Helix 54
AF9
E
510 523Right-handed alpha
Helix 55
AG1
E
526 541Right-handed alpha
Helix 56
AG2
E
544 558Right-handed alpha
Helix 57
AG3
E
570 575Right-handed alpha
Helix 58
AG4
E
578 592Right-handed alpha
Helix 59
AG5
E
594 611Right-handed alpha
Helix 60
AG6
E
617 638Right-handed alpha
Helix 61
AG7
E
640 648Right-handed alpha
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There are 12 sheets in PDB entry 9FEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
30 34parallel
Strand 3
A
3 7parallel
Strand 4
A
81 84parallel
Strand 5
A
122 125parallel
Strand 6
A
152 154parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
190 192anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
274 280anti-parallel
Strand 3
A
283 287anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
30 34parallel
Strand 3
B
3 7parallel
Strand 4
B
81 84parallel
Strand 5
B
122 125parallel
Strand 6
B
152 154parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
190 192anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 261first strand
Strand 2
B
274 280anti-parallel
Strand 3
B
283 287anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 60first strand
Strand 2
C
30 35parallel
Strand 3
C
3 7parallel
Strand 4
C
81 84parallel
Strand 5
C
122 125parallel
Strand 6
C
152 154parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
190 192anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 261first strand
Strand 2
C
274 280anti-parallel
Strand 3
C
283 287anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 60first strand
Strand 2
D
30 35parallel
Strand 3
D
3 7parallel
Strand 4
D
81 84parallel
Strand 5
D
122 125parallel
Strand 6
D
152 154parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
181 183first strand
Strand 2
D
190 192anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 259first strand
Strand 2
D
276 280anti-parallel
Strand 3
D
283 287anti-parallel
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