Analysis of interatomic Contacts of Structural Units in PDB entry:
9FEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FEJ entry

There is 1 chain in PDB entry 9FEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9FEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
44 50Right-handed alpha
Helix 4
AA4
A
75 89Right-handed alpha
Helix 5
AA5
A
112 114Right-handed 310
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
141 156Right-handed alpha
Helix 8
AA8
A
180 195Right-handed alpha
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
206 214Right-handed alpha
Helix 11
AB2
A
253 258Right-handed alpha
Helix 12
AB3
A
275 297Right-handed alpha
Helix 13
AB4
A
297 302Right-handed alpha
Helix 14
AB5
A
305 317Right-handed alpha
Helix 15
AB6
A
332 343Right-handed alpha
Helix 16
AB7
A
347 359Right-handed alpha
Helix 17
AB8
A
392 413Right-handed alpha
Helix 18
AB9
A
419 432Right-handed alpha
Helix 19
AC1
A
453 466Right-handed alpha
Helix 20
AC2
A
499 509Right-handed alpha
Helix 21
AC3
A
521 533Right-handed alpha
Helix 22
AC4
A
534 536Right-handed 310
Helix 23
AC5
A
538 555Right-handed alpha
Helix 24
AC6
A
557 573Right-handed alpha
Helix 25
AC7
A
580 584Right-handed 310
Helix 26
AC8
A
585 594Right-handed alpha
Helix 27
AC9
A
595 598Right-handed 310
Helix 28
AD1
A
603 607Right-handed 310
Helix 29
AD2
A
608 616Right-handed alpha
Helix 30
AD3
A
621 632Right-handed alpha
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There are 9 sheets in PDB entry 9FEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
374 377anti-parallel
Strand 3
A
362 365anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
68 72anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
101 102anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
264 273parallel
Strand 3
A
221 227anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
618 620anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
244 245anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
438 442anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
471 474anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
483 487anti-parallel
Strand 3
A
494 498anti-parallel
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