Analysis of interatomic Contacts of Structural Units in PDB entry:
9FFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FFB entry

There are 4 chains in PDB entry 9FFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
S
 G 1 T 22
T
 C 39 C 58
A
 GLY 48GLU 1398
B
 GLU 209ASP 1298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 9FFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
76 88Right-handed alpha
Helix 3
AA3
A
91 107Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
139 144Right-handed alpha
Helix 6
AA6
A
145 147Right-handed 310
Helix 7
AA7
A
148 160Right-handed alpha
Helix 8
AA8
A
176 184Right-handed alpha
Helix 9
AA9
A
191 204Right-handed alpha
Helix 10
AB1
A
207 222Right-handed alpha
Helix 11
AB2
A
226 241Right-handed alpha
Helix 12
AB3
A
244 255Right-handed alpha
Helix 13
AB4
A
258 272Right-handed alpha
Helix 14
AB5
A
280 291Right-handed alpha
Helix 15
AB6
A
296 308Right-handed alpha
Helix 16
AB7
A
351 360Right-handed alpha
Helix 17
AB8
A
361 378Right-handed alpha
Helix 18
AB9
A
381 394Right-handed alpha
Helix 19
AC1
A
400 413Right-handed alpha
Helix 20
AC2
A
417 427Right-handed alpha
Helix 21
AC3
A
428 431Right-handed 310
Helix 22
AC4
A
433 446Right-handed alpha
Helix 23
AC5
A
450 466Right-handed alpha
Helix 24
AC6
A
469 486Right-handed alpha
Helix 25
AC7
A
488 506Right-handed alpha
Helix 26
AC8
A
506 524Right-handed alpha
Helix 27
AC9
A
528 540Right-handed alpha
Helix 28
AD1
A
549 564Right-handed alpha
Helix 29
AD2
A
570 588Right-handed alpha
Helix 30
AD3
A
608 623Right-handed alpha
Helix 31
AD4
A
626 644Right-handed alpha
Helix 32
AD5
A
649 657Right-handed alpha
Helix 33
AD6
A
659 664Right-handed alpha
Helix 34
AD7
A
733 747Right-handed alpha
Helix 35
AD8
A
754 758Right-handed 310
Helix 36
AD9
A
766 776Right-handed 310
Helix 37
AE1
A
780 803Right-handed alpha
Helix 38
AE2
A
810 835Right-handed alpha
Helix 39
AE3
A
920 924Right-handed 310
Helix 40
AE4
A
931 935Right-handed 310
Helix 41
AE5
A
961 979Right-handed alpha
Helix 42
AE6
A
1007 1018Right-handed alpha
Helix 43
AE7
A
1019 1036Right-handed alpha
Helix 44
AE8
A
1050 1072Right-handed alpha
Helix 45
AE9
A
1073 1078Right-handed 310
Helix 46
AF1
A
1079 1080Right-handed 310
Helix 47
AF2
A
1081 1097Right-handed alpha
Helix 48
AF3
A
1105 1118Right-handed alpha
Helix 49
AF4
A
1126 1141Right-handed alpha
Helix 50
AF5
A
1146 1163Right-handed alpha
Helix 51
AF6
A
1176 1193Right-handed alpha
Helix 52
AF7
A
1195 1206Right-handed alpha
Helix 53
AF8
A
1208 1214Right-handed alpha
Helix 54
AF9
A
1230 1248Right-handed alpha
Helix 55
AG1
A
1262 1285Right-handed alpha
Helix 56
AG2
A
1287 1320Right-handed alpha
Helix 57
AG3
A
1321 1348Right-handed alpha
Helix 58
AG4
A
1353 1355Right-handed 310
Helix 59
AG5
A
1356 1378Right-handed alpha
Helix 60
AG6
B
210 224Right-handed alpha
Helix 61
AG7
B
228 245Right-handed alpha
Helix 62
AG8
B
264 284Right-handed alpha
Helix 63
AG9
B
285 290Right-handed alpha
Helix 64
AH1
B
293 302Right-handed alpha
Helix 65
AH2
B
308 319Right-handed alpha
Helix 66
AH3
B
324 349Right-handed alpha
Helix 67
AH4
B
349 356Right-handed alpha
Helix 68
AH5
B
361 373Right-handed alpha
Helix 69
AH6
B
378 396Right-handed alpha
Helix 70
AH7
B
416 435Right-handed alpha
Helix 71
AH8
B
438 451Right-handed alpha
Helix 72
AH9
B
458 472Right-handed alpha
Helix 73
AI1
B
474 479Right-handed alpha
Helix 74
AI2
B
483 491Right-handed 310
Helix 75
AI3
B
496 512Right-handed alpha
Helix 76
AI4
B
512 528Right-handed alpha
Helix 77
AI5
B
531 549Right-handed alpha
Helix 78
AI6
B
583 589Right-handed alpha
Helix 79
AI7
B
589 597Right-handed alpha
Helix 80
AI8
B
600 616Right-handed alpha
Helix 81
AI9
B
619 634Right-handed alpha
Helix 82
AJ1
B
635 637Right-handed 310
Helix 83
AJ2
B
648 652Right-handed 310
Helix 84
AJ3
B
665 684Right-handed alpha
Helix 85
AJ4
B
701 719Right-handed alpha
Helix 86
AJ5
B
738 764Right-handed alpha
Helix 87
AJ6
B
767 786Right-handed alpha
Helix 88
AJ7
B
809 821Right-handed alpha
Helix 89
AJ8
B
830 836Right-handed alpha
Helix 90
AJ9
B
838 859Right-handed alpha
Helix 91
AK1
B
869 891Right-handed alpha
Helix 92
AK2
B
906 924Right-handed alpha
Helix 93
AK3
B
928 936Right-handed alpha
Helix 94
AK4
B
949 971Right-handed alpha
Helix 95
AK5
B
972 976Right-handed 310
Helix 96
AK6
B
977 992Right-handed alpha
Helix 97
AK7
B
993 995Right-handed 310
Helix 98
AK8
B
1000 1016Right-handed alpha
Helix 99
AK9
B
1020 1035Right-handed alpha
Helix 100
AL1
B
1041 1056Right-handed alpha
Helix 101
AL2
B
1080 1106Right-handed alpha
Helix 102
AL3
B
1122 1146Right-handed alpha
Helix 103
AL4
B
1152 1167Right-handed alpha
Helix 104
AL5
B
1170 1176Right-handed alpha
Helix 105
AL6
B
1177 1179Right-handed 310
Helix 106
AL7
B
1188 1202Right-handed alpha
Helix 107
AL8
B
1202 1222Right-handed alpha
Helix 108
AL9
B
1242 1247Right-handed alpha
Helix 109
AM1
B
1251 1274Right-handed alpha
Helix 110
AM2
B
1293 1297Right-handed 310
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There are 2 sheets in PDB entry 9FFB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 687first strand
Strand 2
A
762 764anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1389first strand
Strand 2
B
1287 1290anti-parallel
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