Analysis of interatomic Contacts of Structural Units in PDB entry:
9FFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FFE entry

There is 1 chain in PDB entry 9FFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 33LEU 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9FFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 42Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
76 91Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
141 154Right-handed alpha
Helix 7
AA7
A
166 171Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
185 187Right-handed 310
Helix 10
AB1
A
209 220Right-handed alpha
Helix 11
AB2
A
221 223Right-handed 310
Helix 12
AB3
A
255 271Right-handed alpha
Helix 13
AB4
A
298 312Right-handed alpha
Helix 14
AB5
A
326 334Right-handed alpha
Helix 15
AB6
A
362 373Right-handed alpha
Helix 16
AB7
A
393 398Right-handed alpha
Helix 17
AB8
A
399 404Right-handed 310
Helix 18
AB9
A
429 450Right-handed alpha
Helix 19
AC1
A
457 461Right-handed 310
Helix 20
AC2
A
466 475Right-handed alpha
Helix 21
AC3
A
478 491Right-handed alpha
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There are 3 sheets in PDB entry 9FFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
70 72anti-parallel
Strand 3
A
115 117parallel
Strand 4
A
94 96parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
225 232anti-parallel
Strand 4
A
189 195anti-parallel
Strand 5
A
201 205anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 325first strand
Strand 2
A
240 248anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
282 284anti-parallel
Strand 5
A
383 390anti-parallel
Strand 6
A
411 420anti-parallel
Strand 7
A
348 356anti-parallel
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