Analysis of interatomic Contacts of Structural Units in PDB entry:
9FFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FFF entry

There are 4 chains in PDB entry 9FFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48GLU 1398
B
 GLU 209ASP 1298
S
 G 1 A 32
T
 A 26 C 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 9FFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
75 88Right-handed alpha
Helix 3
AA3
A
91 108Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
139 145Right-handed alpha
Helix 6
AA6
A
147 163Right-handed alpha
Helix 7
AA7
A
175 184Right-handed alpha
Helix 8
AA8
A
194 206Right-handed alpha
Helix 9
AA9
A
207 217Right-handed alpha
Helix 10
AB1
A
217 222Right-handed alpha
Helix 11
AB2
A
226 240Right-handed alpha
Helix 12
AB3
A
241 243Right-handed 310
Helix 13
AB4
A
244 255Right-handed alpha
Helix 14
AB5
A
258 273Right-handed alpha
Helix 15
AB6
A
280 292Right-handed alpha
Helix 16
AB7
A
294 296Right-handed 310
Helix 17
AB8
A
297 309Right-handed alpha
Helix 18
AB9
A
351 360Right-handed alpha
Helix 19
AC1
A
363 376Right-handed alpha
Helix 20
AC2
A
381 393Right-handed alpha
Helix 21
AC3
A
402 412Right-handed alpha
Helix 22
AC4
A
416 427Right-handed alpha
Helix 23
AC5
A
428 434Right-handed alpha
Helix 24
AC6
A
435 447Right-handed alpha
Helix 25
AC7
A
450 466Right-handed alpha
Helix 26
AC8
A
469 486Right-handed alpha
Helix 27
AC9
A
488 506Right-handed alpha
Helix 28
AD1
A
506 524Right-handed alpha
Helix 29
AD2
A
528 540Right-handed alpha
Helix 30
AD3
A
541 546Right-handed alpha
Helix 31
AD4
A
550 566Right-handed alpha
Helix 32
AD5
A
573 588Right-handed alpha
Helix 33
AD6
A
608 623Right-handed alpha
Helix 34
AD7
A
626 645Right-handed alpha
Helix 35
AD8
A
649 658Right-handed alpha
Helix 36
AD9
A
659 668Right-handed alpha
Helix 37
AE1
A
702 708Right-handed alpha
Helix 38
AE2
A
728 733Right-handed alpha
Helix 39
AE3
A
735 747Right-handed alpha
Helix 40
AE4
A
766 771Right-handed 310
Helix 41
AE5
A
772 777Right-handed alpha
Helix 42
AE6
A
780 802Right-handed alpha
Helix 43
AE7
A
809 835Right-handed alpha
Helix 44
AE8
A
920 924Right-handed 310
Helix 45
AE9
A
928 935Right-handed 310
Helix 46
AF1
A
960 979Right-handed alpha
Helix 47
AF2
A
1001 1005Right-handed alpha
Helix 48
AF3
A
1007 1017Right-handed alpha
Helix 49
AF4
A
1018 1036Right-handed alpha
Helix 50
AF5
A
1050 1072Right-handed alpha
Helix 51
AF6
A
1073 1078Right-handed 310
Helix 52
AF7
A
1081 1097Right-handed alpha
Helix 53
AF8
A
1105 1119Right-handed alpha
Helix 54
AF9
A
1120 1122Right-handed 310
Helix 55
AG1
A
1126 1141Right-handed alpha
Helix 56
AG2
A
1146 1163Right-handed alpha
Helix 57
AG3
A
1176 1193Right-handed alpha
Helix 58
AG4
A
1195 1214Right-handed alpha
Helix 59
AG5
A
1230 1248Right-handed alpha
Helix 60
AG6
A
1259 1264Right-handed alpha
Helix 61
AG7
A
1265 1285Right-handed alpha
Helix 62
AG8
A
1287 1317Right-handed alpha
Helix 63
AG9
A
1321 1348Right-handed alpha
Helix 64
AH1
A
1350 1355Right-handed alpha
Helix 65
AH2
A
1356 1378Right-handed alpha
Helix 66
AH3
B
210 224Right-handed alpha
Helix 67
AH4
B
228 246Right-handed alpha
Helix 68
AH5
B
264 284Right-handed alpha
Helix 69
AH6
B
285 287Right-handed 310
Helix 70
AH7
B
288 302Right-handed alpha
Helix 71
AH8
B
308 321Right-handed alpha
Helix 72
AH9
B
324 348Right-handed alpha
Helix 73
AI1
B
349 356Right-handed alpha
Helix 74
AI2
B
361 373Right-handed alpha
Helix 75
AI3
B
379 396Right-handed alpha
Helix 76
AI4
B
416 435Right-handed alpha
Helix 77
AI5
B
438 451Right-handed alpha
Helix 78
AI6
B
458 472Right-handed alpha
Helix 79
AI7
B
474 479Right-handed alpha
Helix 80
AI8
B
484 488Right-handed 310
Helix 81
AI9
B
496 512Right-handed alpha
Helix 82
AJ1
B
512 528Right-handed alpha
Helix 83
AJ2
B
534 549Right-handed alpha
Helix 84
AJ3
B
583 595Right-handed alpha
Helix 85
AJ4
B
600 616Right-handed alpha
Helix 86
AJ5
B
619 638Right-handed alpha
Helix 87
AJ6
B
648 653Right-handed 310
Helix 88
AJ7
B
666 684Right-handed alpha
Helix 89
AJ8
B
701 718Right-handed alpha
Helix 90
AJ9
B
736 764Right-handed alpha
Helix 91
AK1
B
767 785Right-handed alpha
Helix 92
AK2
B
809 821Right-handed alpha
Helix 93
AK3
B
830 838Right-handed alpha
Helix 94
AK4
B
838 859Right-handed alpha
Helix 95
AK5
B
869 891Right-handed alpha
Helix 96
AK6
B
906 925Right-handed alpha
Helix 97
AK7
B
928 937Right-handed alpha
Helix 98
AK8
B
949 971Right-handed alpha
Helix 99
AK9
B
977 992Right-handed alpha
Helix 100
AL1
B
999 1016Right-handed alpha
Helix 101
AL2
B
1020 1035Right-handed alpha
Helix 102
AL3
B
1041 1056Right-handed alpha
Helix 103
AL4
B
1075 1079Right-handed 310
Helix 104
AL5
B
1080 1085Right-handed alpha
Helix 105
AL6
B
1085 1106Right-handed alpha
Helix 106
AL7
B
1122 1146Right-handed alpha
Helix 107
AL8
B
1152 1177Right-handed alpha
Helix 108
AL9
B
1188 1202Right-handed alpha
Helix 109
AM1
B
1202 1222Right-handed alpha
Helix 110
AM2
B
1242 1250Right-handed alpha
Helix 111
AM3
B
1251 1275Right-handed alpha
Helix 112
AM4
B
1294 1298Right-handed 310
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There are 2 sheets in PDB entry 9FFF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 687first strand
Strand 2
A
762 764anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1385 1388first strand
Strand 2
B
1288 1291anti-parallel
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