Analysis of interatomic Contacts of Structural Units in PDB entry:
9FFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FFH entry

There is 1 chain in PDB entry 9FFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 3GLU 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9FFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
71 79Right-handed alpha
Helix 2
AA2
B
87 97Right-handed alpha
Helix 3
AA3
B
108 115Right-handed alpha
Helix 4
AA4
B
129 147Right-handed alpha
Helix 5
AA5
B
168 174Right-handed alpha
Helix 6
AA6
B
263 275Right-handed alpha
Helix 7
AA7
B
284 292Right-handed alpha
Helix 8
AA8
B
320 327Right-handed alpha
Helix 9
AA9
B
380 387Right-handed alpha
Helix 10
AB1
B
394 398Right-handed 310
Helix 11
AB2
B
404 408Right-handed 310
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There are 4 sheets in PDB entry 9FFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 20first strand
Strand 2
B
476 488anti-parallel
Strand 3
B
40 49anti-parallel
Strand 4
B
334 342anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
24 33anti-parallel
Strand 3
B
350 360anti-parallel
Strand 4
B
60 70anti-parallel
Strand 5
B
302 307anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
329 332anti-parallel
Strand 3
B
314 317anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
119 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il