Analysis of interatomic Contacts of Structural Units in PDB entry:
9FGA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FGA entry

There are 6 chains in PDB entry 9FGA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	ARG 418
B	SER 10	VAL 447
C	ASP 26	LEU 436
D	THR 13	ARG 418
E	ASN 8	VAL 447
F	GLN 2	SER 530

There are 56 helices in PDB entry 9FGA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	142	146	Right-handed 310
Helix 5	AA5	A	174	178	Right-handed alpha
Helix 6	AA6	A	223	230	Right-handed alpha
Helix 7	AA7	A	230	244	Right-handed alpha
Helix 8	AA8	A	245	247	Right-handed 310
Helix 9	AA9	A	251	276	Right-handed alpha
Helix 10	AB1	A	284	309	Right-handed alpha
Helix 11	AB2	A	390	416	Right-handed alpha
Helix 12	AB3	B	11	21	Right-handed alpha
Helix 13	AB4	B	70	73	Right-handed 310
Helix 14	AB5	B	84	91	Right-handed 310
Helix 15	AB6	B	170	173	Right-handed 310
Helix 16	AB7	B	218	225	Right-handed alpha
Helix 17	AB8	B	225	237	Right-handed alpha
Helix 18	AB9	B	238	242	Right-handed 310
Helix 19	AC1	B	246	272	Right-handed alpha
Helix 20	AC2	B	279	308	Right-handed alpha
Helix 21	AC3	B	419	446	Right-handed alpha
Helix 22	AC4	C	27	36	Right-handed alpha
Helix 23	AC5	C	85	88	Right-handed 310
Helix 24	AC6	C	99	106	Right-handed 310
Helix 25	AC7	C	192	196	Right-handed 310
Helix 26	AC8	C	233	240	Right-handed alpha
Helix 27	AC9	C	240	252	Right-handed alpha
Helix 28	AD1	C	252	257	Right-handed alpha
Helix 29	AD2	C	261	282	Right-handed alpha
Helix 30	AD3	C	294	322	Right-handed alpha
Helix 31	AD4	C	409	435	Right-handed alpha
Helix 32	AD5	D	14	23	Right-handed alpha
Helix 33	AD6	D	73	76	Right-handed 310
Helix 34	AD7	D	87	92	Right-handed alpha
Helix 35	AD8	D	142	146	Right-handed 310
Helix 36	AD9	D	174	177	Right-handed 310
Helix 37	AE1	D	223	230	Right-handed alpha
Helix 38	AE2	D	230	244	Right-handed alpha
Helix 39	AE3	D	245	247	Right-handed 310
Helix 40	AE4	D	251	277	Right-handed alpha
Helix 41	AE5	D	284	309	Right-handed alpha
Helix 42	AE6	D	390	417	Right-handed alpha
Helix 43	AE7	E	9	21	Right-handed alpha
Helix 44	AE8	E	70	73	Right-handed 310
Helix 45	AE9	E	84	91	Right-handed 310
Helix 46	AF1	E	170	173	Right-handed 310
Helix 47	AF2	E	177	181	Right-handed 310
Helix 48	AF3	E	218	225	Right-handed alpha
Helix 49	AF4	E	225	237	Right-handed alpha
Helix 50	AF5	E	238	242	Right-handed 310
Helix 51	AF6	E	246	272	Right-handed alpha
Helix 52	AF7	E	279	308	Right-handed alpha
Helix 53	AF8	E	420	446	Right-handed alpha
Helix 54	AF9	F	468	471	Right-handed 310
Helix 55	AG1	F	493	497	Right-handed 310
Helix 56	AG2	F	513	517	Right-handed 310

There are 20 sheets in PDB entry 9FGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	117	122	anti-parallel
Strand 3	A	126	138	anti-parallel
Strand 4	A	59	71	anti-parallel
Strand 5	A	39	54	anti-parallel
Strand 6	A	167	171	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	126	138	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	39	54	anti-parallel
Strand 5	A	179	181	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	208	221	anti-parallel
Strand 4	A	191	205	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	116	121	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	190	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	168	171	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	168	171	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	201	214	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	126	138	anti-parallel
Strand 4	D	59	71	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	167	171	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	126	138	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	39	54	anti-parallel
Strand 5	D	179	181	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	150	159	anti-parallel
Strand 3	D	209	221	anti-parallel
Strand 4	D	191	204	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	151	156	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	147	148	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	151	156	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	186	199	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	425	432	anti-parallel
Strand 3	F	484	489	anti-parallel
Strand 4	F	475	479	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	524	528	parallel
Strand 3	F	499	505	anti-parallel
Strand 4	F	440	446	anti-parallel
Strand 5	F	452	458	anti-parallel
Strand 6	F	464	466	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	524	528	parallel
Strand 3	F	499	505	anti-parallel
Strand 4	F	519	520	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FGA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FGA