Analysis of interatomic Contacts of Structural Units in PDB entry:
9FGH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FGH entry

There are 6 chains in PDB entry 9FGH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	LEU 416
B	MET 9	VAL 447
C	VAL 27	LEU 436
D	THR 12	LEU 416
E	MET 9	VAL 447
G	GLN 1	SER 529

There are 56 helices in PDB entry 9FGH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	73	76	Right-handed 310
Helix 3	AA3	A	87	94	Right-handed 310
Helix 4	AA4	A	174	177	Right-handed 310
Helix 5	AA5	A	223	230	Right-handed alpha
Helix 6	AA6	A	230	242	Right-handed alpha
Helix 7	AA7	A	243	247	Right-handed 310
Helix 8	AA8	A	251	273	Right-handed alpha
Helix 9	AA9	A	284	308	Right-handed alpha
Helix 10	AB1	A	309	311	Right-handed 310
Helix 11	AB2	A	390	416	Right-handed alpha
Helix 12	AB3	B	10	21	Right-handed alpha
Helix 13	AB4	B	70	73	Right-handed 310
Helix 14	AB5	B	84	91	Right-handed 310
Helix 15	AB6	B	170	173	Right-handed 310
Helix 16	AB7	B	177	181	Right-handed 310
Helix 17	AB8	B	218	225	Right-handed alpha
Helix 18	AB9	B	225	236	Right-handed alpha
Helix 19	AC1	B	237	242	Right-handed 310
Helix 20	AC2	B	246	267	Right-handed alpha
Helix 21	AC3	B	268	272	Right-handed 310
Helix 22	AC4	B	279	308	Right-handed alpha
Helix 23	AC5	B	420	447	Right-handed alpha
Helix 24	AC6	C	28	36	Right-handed alpha
Helix 25	AC7	C	85	88	Right-handed 310
Helix 26	AC8	C	102	106	Right-handed 310
Helix 27	AC9	C	233	240	Right-handed alpha
Helix 28	AD1	C	240	257	Right-handed alpha
Helix 29	AD2	C	261	285	Right-handed alpha
Helix 30	AD3	C	294	323	Right-handed alpha
Helix 31	AD4	C	406	408	Right-handed 310
Helix 32	AD5	C	409	433	Right-handed alpha
Helix 33	AD6	D	13	24	Right-handed alpha
Helix 34	AD7	D	73	76	Right-handed 310
Helix 35	AD8	D	87	94	Right-handed 310
Helix 36	AD9	D	142	146	Right-handed 310
Helix 37	AE1	D	174	177	Right-handed 310
Helix 38	AE2	D	223	230	Right-handed alpha
Helix 39	AE3	D	230	243	Right-handed alpha
Helix 40	AE4	D	244	247	Right-handed 310
Helix 41	AE5	D	251	275	Right-handed alpha
Helix 42	AE6	D	284	310	Right-handed alpha
Helix 43	AE7	D	390	416	Right-handed alpha
Helix 44	AE8	E	10	20	Right-handed alpha
Helix 45	AE9	E	70	73	Right-handed 310
Helix 46	AF1	E	84	91	Right-handed 310
Helix 47	AF2	E	139	143	Right-handed 310
Helix 48	AF3	E	170	173	Right-handed 310
Helix 49	AF4	E	217	225	Right-handed alpha
Helix 50	AF5	E	225	237	Right-handed alpha
Helix 51	AF6	E	238	242	Right-handed 310
Helix 52	AF7	E	246	270	Right-handed alpha
Helix 53	AF8	E	279	308	Right-handed alpha
Helix 54	AF9	E	420	447	Right-handed alpha
Helix 55	AG1	G	492	496	Right-handed 310
Helix 56	AG2	G	512	516	Right-handed 310

There are 19 sheets in PDB entry 9FGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	117	122	anti-parallel
Strand 3	A	126	138	anti-parallel
Strand 4	A	59	71	anti-parallel
Strand 5	A	39	54	anti-parallel
Strand 6	A	167	171	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	126	138	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	39	54	anti-parallel
Strand 5	A	179	181	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	208	221	anti-parallel
Strand 4	A	191	205	anti-parallel
Strand 5	G	462	465	anti-parallel
Strand 6	G	452	457	anti-parallel
Strand 7	G	439	445	anti-parallel
Strand 8	G	497	504	anti-parallel
Strand 9	G	523	528	anti-parallel
Strand 10	G	11	13	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	208	221	anti-parallel
Strand 4	A	191	205	anti-parallel
Strand 5	G	462	465	anti-parallel
Strand 6	G	452	457	anti-parallel
Strand 7	G	439	445	anti-parallel
Strand 8	G	497	504	anti-parallel
Strand 9	G	518	519	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	186	200	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	182	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	138	150	anti-parallel
Strand 3	C	71	83	anti-parallel
Strand 4	C	51	66	anti-parallel
Strand 5	C	188	190	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	162	171	anti-parallel
Strand 3	C	219	231	anti-parallel
Strand 4	C	201	214	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	126	138	anti-parallel
Strand 4	D	59	71	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	167	171	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	126	138	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	39	54	anti-parallel
Strand 5	D	179	181	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	157	159	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	214	221	anti-parallel
Strand 3	D	191	199	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	209	211	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	203	215	anti-parallel
Strand 4	E	188	200	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	424	431	anti-parallel
Strand 3	G	483	488	anti-parallel
Strand 4	G	474	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FGH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FGH