Analysis of interatomic Contacts of Structural Units in PDB entry:
9FGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FGV entry

There are 4 chains in PDB entry 9FGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	THR 366
B	SER 0	SER 124
C	LYS 1	THR 366
D	SER 0	SER 124

There are 41 helices in PDB entry 9FGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	64	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	130	141	Right-handed alpha
Helix 7	AA7	A	153	162	Right-handed alpha
Helix 8	AA8	A	163	165	Right-handed 310
Helix 9	AA9	A	185	201	Right-handed alpha
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	231	239	Right-handed alpha
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	335	353	Right-handed alpha
Helix 18	AB9	A	356	366	Right-handed alpha
Helix 19	AC1	B	87	91	Right-handed 310
Helix 20	AC2	B	108	112	Right-handed 310
Helix 21	AC3	C	16	32	Right-handed alpha
Helix 22	AC4	C	42	52	Right-handed alpha
Helix 23	AC5	C	64	73	Right-handed alpha
Helix 24	AC6	C	82	87	Right-handed alpha
Helix 25	AC7	C	90	97	Right-handed alpha
Helix 26	AC8	C	130	141	Right-handed alpha
Helix 27	AC9	C	153	162	Right-handed alpha
Helix 28	AD1	C	163	165	Right-handed 310
Helix 29	AD2	C	185	201	Right-handed alpha
Helix 30	AD3	C	209	219	Right-handed alpha
Helix 31	AD4	C	228	230	Right-handed 310
Helix 32	AD5	C	231	239	Right-handed alpha
Helix 33	AD6	C	272	283	Right-handed alpha
Helix 34	AD7	C	286	297	Right-handed alpha
Helix 35	AD8	C	304	312	Right-handed alpha
Helix 36	AD9	C	314	327	Right-handed alpha
Helix 37	AE1	C	335	353	Right-handed alpha
Helix 38	AE2	C	356	366	Right-handed alpha
Helix 39	AE3	D	62	65	Right-handed 310
Helix 40	AE4	D	87	91	Right-handed 310
Helix 41	AE5	D	108	112	Right-handed 310

There are 16 sheets in PDB entry 9FGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	105	112	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	175	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	114	115	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	105	112	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	328	329	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	175	177	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FGV