Analysis of interatomic Contacts of Structural Units in PDB entry:
9FHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FHY entry

There are 4 chains in PDB entry 9FHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 23LYS 402
B
SER 23LYS 402
C
SER 23LYS 402
D
SER 23LYS 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 93 helices in PDB entry 9FHY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
45 65Right-handed alpha
Helix 3
AA3
A
112 118Right-handed 310
Helix 4
AA4
A
119 142Right-handed alpha
Helix 5
AA5
A
143 158Right-handed alpha
Helix 6
AA6
A
183 188Right-handed 310
Helix 7
AA7
A
189 199Right-handed alpha
Helix 8
AA8
A
200 203Right-handed 310
Helix 9
AA9
A
209 230Right-handed alpha
Helix 10
AB1
A
230 238Right-handed alpha
Helix 11
AB2
A
241 258Right-handed alpha
Helix 12
AB3
A
260 271Right-handed alpha
Helix 13
AB4
A
271 280Right-handed alpha
Helix 14
AB5
A
286 291Right-handed alpha
Helix 15
AB6
A
294 314Right-handed alpha
Helix 16
AB7
A
315 317Right-handed 310
Helix 17
AB8
A
330 344Right-handed alpha
Helix 18
AB9
A
345 348Right-handed 310
Helix 19
AC1
A
357 359Right-handed 310
Helix 20
AC2
A
360 373Right-handed alpha
Helix 21
AC3
A
374 385Right-handed alpha
Helix 22
AC4
A
392 396Right-handed 310
Helix 23
AC5
A
398 402Right-handed 310
Helix 24
AC6
B
30 43Right-handed alpha
Helix 25
AC7
B
45 59Right-handed alpha
Helix 26
AC8
B
59 65Right-handed alpha
Helix 27
AC9
B
112 118Right-handed 310
Helix 28
AD1
B
119 142Right-handed alpha
Helix 29
AD2
B
143 158Right-handed alpha
Helix 30
AD3
B
183 188Right-handed 310
Helix 31
AD4
B
189 199Right-handed alpha
Helix 32
AD5
B
200 203Right-handed 310
Helix 33
AD6
B
209 230Right-handed alpha
Helix 34
AD7
B
230 238Right-handed alpha
Helix 35
AD8
B
241 258Right-handed alpha
Helix 36
AD9
B
260 271Right-handed alpha
Helix 37
AE1
B
271 280Right-handed alpha
Helix 38
AE2
B
286 291Right-handed alpha
Helix 39
AE3
B
294 314Right-handed alpha
Helix 40
AE4
B
315 317Right-handed 310
Helix 41
AE5
B
331 344Right-handed alpha
Helix 42
AE6
B
345 348Right-handed 310
Helix 43
AE7
B
357 359Right-handed 310
Helix 44
AE8
B
360 373Right-handed alpha
Helix 45
AE9
B
374 385Right-handed alpha
Helix 46
AF1
B
392 396Right-handed 310
Helix 47
AF2
B
398 402Right-handed 310
Helix 48
AF3
C
30 43Right-handed alpha
Helix 49
AF4
C
45 65Right-handed alpha
Helix 50
AF5
C
112 118Right-handed 310
Helix 51
AF6
C
119 142Right-handed alpha
Helix 52
AF7
C
143 158Right-handed alpha
Helix 53
AF8
C
183 188Right-handed 310
Helix 54
AF9
C
189 203Right-handed alpha
Helix 55
AG1
C
209 230Right-handed alpha
Helix 56
AG2
C
230 238Right-handed alpha
Helix 57
AG3
C
241 258Right-handed alpha
Helix 58
AG4
C
260 271Right-handed alpha
Helix 59
AG5
C
271 280Right-handed alpha
Helix 60
AG6
C
286 291Right-handed alpha
Helix 61
AG7
C
294 314Right-handed alpha
Helix 62
AG8
C
315 317Right-handed 310
Helix 63
AG9
C
331 344Right-handed alpha
Helix 64
AH1
C
345 348Right-handed 310
Helix 65
AH2
C
357 359Right-handed 310
Helix 66
AH3
C
360 373Right-handed alpha
Helix 67
AH4
C
374 385Right-handed alpha
Helix 68
AH5
C
392 396Right-handed 310
Helix 69
AH6
C
398 402Right-handed 310
Helix 70
AH7
D
30 43Right-handed alpha
Helix 71
AH8
D
45 59Right-handed alpha
Helix 72
AH9
D
59 65Right-handed alpha
Helix 73
AI1
D
112 118Right-handed 310
Helix 74
AI2
D
119 142Right-handed alpha
Helix 75
AI3
D
143 158Right-handed alpha
Helix 76
AI4
D
183 188Right-handed 310
Helix 77
AI5
D
189 199Right-handed alpha
Helix 78
AI6
D
200 203Right-handed 310
Helix 79
AI7
D
209 230Right-handed alpha
Helix 80
AI8
D
230 238Right-handed alpha
Helix 81
AI9
D
241 258Right-handed alpha
Helix 82
AJ1
D
260 271Right-handed alpha
Helix 83
AJ2
D
271 280Right-handed alpha
Helix 84
AJ3
D
286 291Right-handed alpha
Helix 85
AJ4
D
294 314Right-handed alpha
Helix 86
AJ5
D
315 317Right-handed 310
Helix 87
AJ6
D
330 344Right-handed alpha
Helix 88
AJ7
D
345 348Right-handed 310
Helix 89
AJ8
D
357 359Right-handed 310
Helix 90
AJ9
D
360 373Right-handed alpha
Helix 91
AK1
D
374 385Right-handed alpha
Helix 92
AK2
D
392 396Right-handed 310
Helix 93
AK3
D
398 402Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9FHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
86 88first strand
Strand 2
A
171 174parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
92 93first strand
Strand 2
A
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
86 88first strand
Strand 2
B
171 174parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 93first strand
Strand 2
B
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
86 88first strand
Strand 2
C
171 174parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
92 93first strand
Strand 2
C
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
86 88first strand
Strand 2
D
171 174parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
92 93first strand
Strand 2
D
105 106anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il