Analysis of interatomic Contacts of Structural Units in PDB entry:
9FI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FI3 entry

There are 4 chains in PDB entry 9FI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	LYS 402
B	SER 23	LYS 402
C	SER 23	LYS 402
D	ALA 22	LYS 402

There are 90 helices in PDB entry 9FI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	44	Right-handed alpha
Helix 2	AA2	A	45	65	Right-handed alpha
Helix 3	AA3	A	112	118	Right-handed 310
Helix 4	AA4	A	119	142	Right-handed alpha
Helix 5	AA5	A	143	158	Right-handed alpha
Helix 6	AA6	A	186	188	Right-handed 310
Helix 7	AA7	A	189	199	Right-handed alpha
Helix 8	AA8	A	200	203	Right-handed 310
Helix 9	AA9	A	209	230	Right-handed alpha
Helix 10	AB1	A	230	238	Right-handed alpha
Helix 11	AB2	A	241	258	Right-handed alpha
Helix 12	AB3	A	260	271	Right-handed alpha
Helix 13	AB4	A	271	280	Right-handed alpha
Helix 14	AB5	A	286	291	Right-handed alpha
Helix 15	AB6	A	294	314	Right-handed alpha
Helix 16	AB7	A	315	317	Right-handed 310
Helix 17	AB8	A	331	344	Right-handed alpha
Helix 18	AB9	A	345	348	Right-handed 310
Helix 19	AC1	A	359	373	Right-handed alpha
Helix 20	AC2	A	374	385	Right-handed alpha
Helix 21	AC3	A	392	396	Right-handed 310
Helix 22	AC4	A	398	402	Right-handed 310
Helix 23	AC5	B	30	44	Right-handed alpha
Helix 24	AC6	B	45	65	Right-handed alpha
Helix 25	AC7	B	112	118	Right-handed 310
Helix 26	AC8	B	119	142	Right-handed alpha
Helix 27	AC9	B	143	159	Right-handed alpha
Helix 28	AD1	B	184	188	Right-handed 310
Helix 29	AD2	B	189	199	Right-handed alpha
Helix 30	AD3	B	200	203	Right-handed 310
Helix 31	AD4	B	209	230	Right-handed alpha
Helix 32	AD5	B	230	238	Right-handed alpha
Helix 33	AD6	B	241	258	Right-handed alpha
Helix 34	AD7	B	260	271	Right-handed alpha
Helix 35	AD8	B	271	280	Right-handed alpha
Helix 36	AD9	B	286	291	Right-handed alpha
Helix 37	AE1	B	294	314	Right-handed alpha
Helix 38	AE2	B	315	317	Right-handed 310
Helix 39	AE3	B	331	344	Right-handed alpha
Helix 40	AE4	B	345	348	Right-handed 310
Helix 41	AE5	B	359	373	Right-handed alpha
Helix 42	AE6	B	374	385	Right-handed alpha
Helix 43	AE7	B	392	396	Right-handed 310
Helix 44	AE8	B	398	402	Right-handed 310
Helix 45	AE9	C	30	44	Right-handed alpha
Helix 46	AF1	C	45	65	Right-handed alpha
Helix 47	AF2	C	112	118	Right-handed 310
Helix 48	AF3	C	119	142	Right-handed alpha
Helix 49	AF4	C	143	158	Right-handed alpha
Helix 50	AF5	C	183	188	Right-handed 310
Helix 51	AF6	C	189	199	Right-handed alpha
Helix 52	AF7	C	200	203	Right-handed 310
Helix 53	AF8	C	209	230	Right-handed alpha
Helix 54	AF9	C	230	238	Right-handed alpha
Helix 55	AG1	C	241	258	Right-handed alpha
Helix 56	AG2	C	260	271	Right-handed alpha
Helix 57	AG3	C	271	280	Right-handed alpha
Helix 58	AG4	C	286	291	Right-handed alpha
Helix 59	AG5	C	294	314	Right-handed alpha
Helix 60	AG6	C	315	317	Right-handed 310
Helix 61	AG7	C	331	344	Right-handed alpha
Helix 62	AG8	C	345	348	Right-handed 310
Helix 63	AG9	C	357	359	Right-handed 310
Helix 64	AH1	C	360	373	Right-handed alpha
Helix 65	AH2	C	374	385	Right-handed alpha
Helix 66	AH3	C	392	396	Right-handed 310
Helix 67	AH4	C	398	402	Right-handed 310
Helix 68	AH5	D	30	44	Right-handed alpha
Helix 69	AH6	D	45	65	Right-handed alpha
Helix 70	AH7	D	112	118	Right-handed 310
Helix 71	AH8	D	119	142	Right-handed alpha
Helix 72	AH9	D	143	158	Right-handed alpha
Helix 73	AI1	D	184	188	Right-handed 310
Helix 74	AI2	D	189	199	Right-handed alpha
Helix 75	AI3	D	200	203	Right-handed 310
Helix 76	AI4	D	209	230	Right-handed alpha
Helix 77	AI5	D	230	238	Right-handed alpha
Helix 78	AI6	D	241	258	Right-handed alpha
Helix 79	AI7	D	260	271	Right-handed alpha
Helix 80	AI8	D	271	280	Right-handed alpha
Helix 81	AI9	D	286	291	Right-handed alpha
Helix 82	AJ1	D	294	314	Right-handed alpha
Helix 83	AJ2	D	315	317	Right-handed 310
Helix 84	AJ3	D	331	344	Right-handed alpha
Helix 85	AJ4	D	345	348	Right-handed 310
Helix 86	AJ5	D	357	359	Right-handed 310
Helix 87	AJ6	D	360	373	Right-handed alpha
Helix 88	AJ7	D	374	385	Right-handed alpha
Helix 89	AJ8	D	392	396	Right-handed 310
Helix 90	AJ9	D	398	402	Right-handed 310

There are 8 sheets in PDB entry 9FI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	171	174	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	105	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	171	174	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	105	106	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	171	174	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	105	106	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	171	174	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FI3