Analysis of interatomic Contacts of Structural Units in PDB entry:
9FIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FIE entry

There are 3 chains in PDB entry 9FIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 110	ALA 574
B	ARG 29	ARG 110
C	ASP 108	CYS 211

There are 65 helices in PDB entry 9FIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	121	Right-handed 310
Helix 2	AA2	A	133	140	Right-handed alpha
Helix 3	AA3	A	163	167	Right-handed 310
Helix 4	AA4	A	168	172	Right-handed 310
Helix 5	AA5	A	193	204	Right-handed alpha
Helix 6	AA6	A	232	241	Right-handed alpha
Helix 7	AA7	A	267	281	Right-handed alpha
Helix 8	AA8	A	282	285	Right-handed 310
Helix 9	AA9	A	296	300	Right-handed 310
Helix 10	AB1	A	302	306	Right-handed 310
Helix 11	AB2	A	366	385	Right-handed alpha
Helix 12	AB3	A	389	401	Right-handed alpha
Helix 13	AB4	A	430	439	Right-handed alpha
Helix 14	AB5	A	497	499	Right-handed 310
Helix 15	AB6	B	42	54	Right-handed alpha
Helix 16	AB7	B	83	93	Right-handed alpha
Helix 17	AB8	C	117	121	Right-handed 310
Helix 18	AB9	C	133	140	Right-handed alpha
Helix 19	AC1	C	163	167	Right-handed 310
Helix 20	AC2	C	168	172	Right-handed 310
Helix 21	AC3	C	190	192	Right-handed 310
Helix 22	AC4	C	193	204	Right-handed alpha
Helix 23	AC5	C	232	241	Right-handed alpha
Helix 24	AC6	C	267	281	Right-handed alpha
Helix 25	AC7	C	282	285	Right-handed 310
Helix 26	AC8	C	295	300	Right-handed 310
Helix 27	AC9	C	302	306	Right-handed 310
Helix 28	AD1	C	369	385	Right-handed alpha
Helix 29	AD2	C	389	401	Right-handed alpha
Helix 30	AD3	C	430	439	Right-handed alpha
Helix 31	AD4	C	497	499	Right-handed 310
Helix 32	AD5	D	42	54	Right-handed alpha
Helix 33	AD6	D	83	93	Right-handed alpha
Helix 34	AD7	E	117	121	Right-handed 310
Helix 35	AD8	E	133	140	Right-handed alpha
Helix 36	AD9	E	168	172	Right-handed 310
Helix 37	AE1	E	193	204	Right-handed alpha
Helix 38	AE2	E	232	241	Right-handed alpha
Helix 39	AE3	E	267	281	Right-handed alpha
Helix 40	AE4	E	282	285	Right-handed 310
Helix 41	AE5	E	296	300	Right-handed 310
Helix 42	AE6	E	302	306	Right-handed 310
Helix 43	AE7	E	366	385	Right-handed alpha
Helix 44	AE8	E	389	401	Right-handed alpha
Helix 45	AE9	E	430	439	Right-handed alpha
Helix 46	AF1	E	497	499	Right-handed 310
Helix 47	AF2	F	42	54	Right-handed alpha
Helix 48	AF3	F	83	93	Right-handed alpha
Helix 49	AF4	G	117	121	Right-handed 310
Helix 50	AF5	G	133	140	Right-handed alpha
Helix 51	AF6	G	163	167	Right-handed 310
Helix 52	AF7	G	168	172	Right-handed 310
Helix 53	AF8	G	190	192	Right-handed 310
Helix 54	AF9	G	193	204	Right-handed alpha
Helix 55	AG1	G	232	241	Right-handed alpha
Helix 56	AG2	G	267	281	Right-handed alpha
Helix 57	AG3	G	282	285	Right-handed 310
Helix 58	AG4	G	296	300	Right-handed 310
Helix 59	AG5	G	302	306	Right-handed 310
Helix 60	AG6	G	366	385	Right-handed alpha
Helix 61	AG7	G	389	401	Right-handed alpha
Helix 62	AG8	G	430	439	Right-handed alpha
Helix 63	AG9	G	497	499	Right-handed 310
Helix 64	AH1	H	42	54	Right-handed alpha
Helix 65	AH2	H	83	93	Right-handed alpha

There are 35 sheets in PDB entry 9FIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	220	225	parallel
Strand 3	A	148	153	parallel
Strand 4	A	249	252	parallel
Strand 5	A	288	292	parallel
Strand 6	A	314	320	parallel
Strand 7	A	338	341	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	B	107	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	359	364	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	413	first strand
Strand 2	A	419	420	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	453	first strand
Strand 2	A	561	573	anti-parallel
Strand 3	A	459	460	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	453	first strand
Strand 2	A	561	573	anti-parallel
Strand 3	A	483	495	anti-parallel
Strand 4	A	528	535	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	471	first strand
Strand 2	A	545	553	anti-parallel
Strand 3	A	501	506	anti-parallel
Strand 4	A	512	516	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	31	38	anti-parallel
Strand 4	B	78	79	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	31	38	anti-parallel
Strand 4	B	98	103	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	220	225	parallel
Strand 3	C	148	153	parallel
Strand 4	C	249	252	parallel
Strand 5	C	288	292	parallel
Strand 6	C	314	320	parallel
Strand 7	C	338	341	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	D	107	108	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	359	364	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	413	first strand
Strand 2	C	419	420	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	453	first strand
Strand 2	C	561	573	anti-parallel
Strand 3	C	459	460	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	453	first strand
Strand 2	C	561	573	anti-parallel
Strand 3	C	483	495	anti-parallel
Strand 4	C	528	535	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	471	first strand
Strand 2	C	545	553	anti-parallel
Strand 3	C	501	506	anti-parallel
Strand 4	C	512	516	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	61	first strand
Strand 2	D	64	72	anti-parallel
Strand 3	D	31	38	anti-parallel
Strand 4	D	78	79	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	61	first strand
Strand 2	D	64	72	anti-parallel
Strand 3	D	31	38	anti-parallel
Strand 4	D	98	103	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	174	first strand
Strand 2	E	220	225	parallel
Strand 3	E	148	153	parallel
Strand 4	E	249	252	parallel
Strand 5	E	288	292	parallel
Strand 6	E	314	320	parallel
Strand 7	E	338	341	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	F	108	109	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	355	first strand
Strand 2	E	359	364	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	412	413	first strand
Strand 2	E	419	420	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	453	first strand
Strand 2	E	561	573	anti-parallel
Strand 3	E	459	460	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	453	first strand
Strand 2	E	561	573	anti-parallel
Strand 3	E	483	495	anti-parallel
Strand 4	E	528	535	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	464	471	first strand
Strand 2	E	545	553	anti-parallel
Strand 3	E	501	506	anti-parallel
Strand 4	E	512	516	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	60	first strand
Strand 2	F	67	72	anti-parallel
Strand 3	F	31	38	anti-parallel
Strand 4	F	78	79	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	60	first strand
Strand 2	F	67	72	anti-parallel
Strand 3	F	31	38	anti-parallel
Strand 4	F	98	103	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	174	first strand
Strand 2	G	220	225	parallel
Strand 3	G	148	153	parallel
Strand 4	G	249	252	parallel
Strand 5	G	288	292	parallel
Strand 6	G	314	320	parallel
Strand 7	G	338	341	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	351	355	first strand
Strand 2	G	359	364	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	412	413	first strand
Strand 2	G	419	420	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	448	453	first strand
Strand 2	G	561	573	anti-parallel
Strand 3	G	459	460	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	448	453	first strand
Strand 2	G	561	573	anti-parallel
Strand 3	G	483	495	anti-parallel
Strand 4	G	528	535	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	464	471	first strand
Strand 2	G	545	553	anti-parallel
Strand 3	G	501	506	anti-parallel
Strand 4	G	512	516	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	61	first strand
Strand 2	H	64	72	anti-parallel
Strand 3	H	31	38	anti-parallel
Strand 4	H	78	79	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	61	first strand
Strand 2	H	64	72	anti-parallel
Strand 3	H	31	38	anti-parallel
Strand 4	H	98	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FIE