Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FJ0 entry

There is 1 chain in PDB entry 9FJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ILE 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9FJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
32 42Right-handed alpha
Helix 3
AA3
A
55 58Right-handed 310
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
86 89Right-handed 310
Helix 6
AA6
A
90 98Right-handed alpha
Helix 7
AA7
A
137 142Right-handed alpha
Helix 8
AA8
A
153 169Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
218 229Right-handed alpha
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
283 298Right-handed alpha
Helix 13
AB4
A
331 338Right-handed alpha
Helix 14
AB5
A
347 363Right-handed alpha
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There are 3 sheets in PDB entry 9FJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
13 18parallel
Strand 3
A
146 151anti-parallel
Strand 4
A
128 132anti-parallel
Strand 5
A
121 124anti-parallel
Strand 6
A
46 51anti-parallel
Strand 7
A
78 84parallel
Strand 8
A
102 106parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
340 345anti-parallel
Strand 3
A
322 326anti-parallel
Strand 4
A
314 318anti-parallel
Strand 5
A
233 237anti-parallel
Strand 6
A
271 277parallel
Strand 7
A
302 307parallel
Strand 8
A
368 369anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
250 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il