Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FJF entry

There are 4 chains in PDB entry 9FJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 39	ILE 429
B	ALA 1	GLN 497
C	GLN 1	PRO 130
D	GLN 1	PRO 121

There are 27 helices in PDB entry 9FJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	55	Right-handed alpha
Helix 2	AA2	A	72	77	Right-handed alpha
Helix 3	AA3	A	127	130	Right-handed 310
Helix 4	AA4	A	137	149	Right-handed alpha
Helix 5	AA5	A	152	163	Right-handed alpha
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	183	190	Right-handed alpha
Helix 8	AA8	A	327	331	Right-handed 310
Helix 9	AA9	A	339	343	Right-handed 310
Helix 10	AB1	A	346	353	Right-handed alpha
Helix 11	AB2	A	418	429	Right-handed alpha
Helix 12	AB3	B	86	94	Right-handed alpha
Helix 13	AB4	B	97	109	Right-handed alpha
Helix 14	AB5	B	150	157	Right-handed alpha
Helix 15	AB6	B	157	165	Right-handed alpha
Helix 16	AB7	B	166	168	Right-handed 310
Helix 17	AB8	B	203	210	Right-handed alpha
Helix 18	AB9	B	211	221	Right-handed alpha
Helix 19	AC1	B	222	224	Right-handed 310
Helix 20	AC2	B	254	263	Right-handed alpha
Helix 21	AC3	B	263	271	Right-handed alpha
Helix 22	AC4	B	287	296	Right-handed alpha
Helix 23	AC5	B	323	331	Right-handed alpha
Helix 24	AC6	B	357	371	Right-handed alpha
Helix 25	AC7	B	372	374	Right-handed 310
Helix 26	AC8	B	414	427	Right-handed alpha
Helix 27	AC9	C	28	32	Right-handed 310

There are 14 sheets in PDB entry 9FJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	60	69	anti-parallel
Strand 3	A	404	415	anti-parallel
Strand 4	A	376	389	anti-parallel
Strand 5	A	366	369	anti-parallel
Strand 6	A	290	296	anti-parallel
Strand 7	A	277	287	anti-parallel
Strand 8	A	266	268	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	108	119	anti-parallel
Strand 3	A	91	103	anti-parallel
Strand 4	A	60	69	anti-parallel
Strand 5	A	404	415	anti-parallel
Strand 6	A	376	389	anti-parallel
Strand 7	A	336	337	anti-parallel
Strand 8	A	324	325	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	169	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	198	199	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	410	412	anti-parallel
Strand 3	B	402	405	anti-parallel
Strand 4	B	384	385	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	36	43	anti-parallel
Strand 3	B	488	494	anti-parallel
Strand 4	B	456	461	anti-parallel
Strand 5	B	445	450	anti-parallel
Strand 6	B	432	433	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	468	474	parallel
Strand 4	B	478	484	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	118	122	parallel
Strand 3	B	81	84	parallel
Strand 4	B	378	379	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	336	340	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	21	25	anti-parallel
Strand 3	C	78	82	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	92	96	anti-parallel
Strand 4	C	123	126	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	59	60	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	77	81	anti-parallel
Strand 3	D	68	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	52	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	92	97	anti-parallel
Strand 5	D	115	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJF