Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FJO entry

There are 8 chains in PDB entry 9FJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	GLU 72
A	GLY 74	ARG 372
B	THR 6	GLU 72
B	GLY 74	ARG 372
C	THR 6	GLU 72
C	GLY 74	CYS 374
D	THR 6	GLU 72
D	GLY 74	CYS 374

There are 88 helices in PDB entry 9FJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	60	Right-handed alpha
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	78	92	Right-handed alpha
Helix 5	AA5	A	97	101	Right-handed 310
Helix 6	AA6	A	112	126	Right-handed alpha
Helix 7	AA7	A	137	145	Right-handed alpha
Helix 8	AA8	A	172	175	Right-handed 310
Helix 9	AA9	A	181	194	Right-handed alpha
Helix 10	AB1	A	195	197	Right-handed 310
Helix 11	AB2	A	202	204	Right-handed 310
Helix 12	AB3	A	205	214	Right-handed alpha
Helix 13	AB4	A	222	233	Right-handed alpha
Helix 14	AB5	A	252	257	Right-handed alpha
Helix 15	AB6	A	258	262	Right-handed 310
Helix 16	AB7	A	263	268	Right-handed 310
Helix 17	AB8	A	273	284	Right-handed alpha
Helix 18	AB9	A	289	295	Right-handed alpha
Helix 19	AC1	A	301	305	Right-handed 310
Helix 20	AC2	A	308	321	Right-handed alpha
Helix 21	AC3	A	334	336	Right-handed 310
Helix 22	AC4	A	337	349	Right-handed alpha
Helix 23	AC5	A	351	355	Right-handed 310
Helix 24	AC6	A	359	366	Right-handed alpha
Helix 25	AC7	A	367	371	Right-handed 310
Helix 26	AC8	B	55	61	Right-handed alpha
Helix 27	AC9	B	81	92	Right-handed alpha
Helix 28	AD1	B	112	126	Right-handed alpha
Helix 29	AD2	B	137	145	Right-handed alpha
Helix 30	AD3	B	172	175	Right-handed 310
Helix 31	AD4	B	181	195	Right-handed alpha
Helix 32	AD5	B	202	217	Right-handed alpha
Helix 33	AD6	B	222	233	Right-handed alpha
Helix 34	AD7	B	251	255	Right-handed 310
Helix 35	AD8	B	257	262	Right-handed 310
Helix 36	AD9	B	263	268	Right-handed 310
Helix 37	AE1	B	273	284	Right-handed alpha
Helix 38	AE2	B	289	295	Right-handed alpha
Helix 39	AE3	B	302	306	Right-handed 310
Helix 40	AE4	B	308	321	Right-handed alpha
Helix 41	AE5	B	337	349	Right-handed alpha
Helix 42	AE6	B	350	355	Right-handed 310
Helix 43	AE7	B	358	365	Right-handed alpha
Helix 44	AE8	B	366	372	Right-handed 310
Helix 45	AE9	C	55	61	Right-handed alpha
Helix 46	AF1	C	62	65	Right-handed 310
Helix 47	AF2	C	78	92	Right-handed alpha
Helix 48	AF3	C	97	101	Right-handed 310
Helix 49	AF4	C	112	126	Right-handed alpha
Helix 50	AF5	C	137	146	Right-handed alpha
Helix 51	AF6	C	172	175	Right-handed 310
Helix 52	AF7	C	181	193	Right-handed alpha
Helix 53	AF8	C	202	217	Right-handed alpha
Helix 54	AF9	C	222	233	Right-handed alpha
Helix 55	AG1	C	252	257	Right-handed alpha
Helix 56	AG2	C	258	261	Right-handed 310
Helix 57	AG3	C	263	268	Right-handed 310
Helix 58	AG4	C	273	285	Right-handed alpha
Helix 59	AG5	C	289	296	Right-handed alpha
Helix 60	AG6	C	302	306	Right-handed 310
Helix 61	AG7	C	308	321	Right-handed alpha
Helix 62	AG8	C	334	336	Right-handed 310
Helix 63	AG9	C	337	348	Right-handed alpha
Helix 64	AH1	C	349	355	Right-handed 310
Helix 65	AH2	C	359	366	Right-handed alpha
Helix 66	AH3	C	368	374	Right-handed alpha
Helix 67	AH4	D	55	61	Right-handed alpha
Helix 68	AH5	D	80	92	Right-handed alpha
Helix 69	AH6	D	97	101	Right-handed 310
Helix 70	AH7	D	112	126	Right-handed alpha
Helix 71	AH8	D	137	145	Right-handed alpha
Helix 72	AH9	D	172	175	Right-handed 310
Helix 73	AI1	D	181	193	Right-handed alpha
Helix 74	AI2	D	194	197	Right-handed 310
Helix 75	AI3	D	202	217	Right-handed alpha
Helix 76	AI4	D	222	233	Right-handed alpha
Helix 77	AI5	D	257	261	Right-handed 310
Helix 78	AI6	D	263	268	Right-handed 310
Helix 79	AI7	D	273	284	Right-handed alpha
Helix 80	AI8	D	289	295	Right-handed alpha
Helix 81	AI9	D	302	306	Right-handed 310
Helix 82	AJ1	D	308	321	Right-handed alpha
Helix 83	AJ2	D	334	336	Right-handed 310
Helix 84	AJ3	D	337	348	Right-handed alpha
Helix 85	AJ4	D	349	356	Right-handed 310
Helix 86	AJ5	D	359	364	Right-handed alpha
Helix 87	AJ6	D	365	367	Right-handed 310
Helix 88	AJ7	D	368	373	Right-handed alpha

There are 22 sheets in PDB entry 9FJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	53	54	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	169	170	anti-parallel
Strand 4	C	41	42	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	10	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	132	136	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	169	170	anti-parallel
Strand 4	D	41	42	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	103	107	parallel
Strand 3	C	131	136	parallel
Strand 4	C	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	16	19	anti-parallel
Strand 3	C	29	32	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	53	54	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	66	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	163	166	anti-parallel
Strand 3	D	150	152	anti-parallel
Strand 4	D	297	298	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJO