Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FJP entry

There are 7 chains in PDB entry 9FJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	MET 1	ASN 226
b	MET 1	ILE 232
c	ASN 29	LEU 1147
d	VAL 4	TYR 1283
e	GLY 28	GLU 110
f	ALA 24	ALA 322
O	G 48	G 57

There are120 helices in PDB entry 9FJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	30	45	Right-handed alpha
Helix 2	AA2	a	72	81	Right-handed alpha
Helix 3	AA3	a	108	110	Right-handed 310
Helix 4	AA4	a	148	156	Right-handed 310
Helix 5	AA5	a	203	225	Right-handed alpha
Helix 6	AA6	b	29	46	Right-handed alpha
Helix 7	AA7	b	72	82	Right-handed alpha
Helix 8	AA8	b	108	110	Right-handed 310
Helix 9	AA9	b	203	224	Right-handed alpha
Helix 10	AB1	c	54	66	Right-handed alpha
Helix 11	AB2	c	67	78	Right-handed alpha
Helix 12	AB3	c	85	90	Right-handed alpha
Helix 13	AB4	c	118	126	Right-handed alpha
Helix 14	AB5	c	225	229	Right-handed 310
Helix 15	AB6	c	234	241	Right-handed alpha
Helix 16	AB7	c	244	252	Right-handed alpha
Helix 17	AB8	c	256	265	Right-handed alpha
Helix 18	AB9	c	269	282	Right-handed alpha
Helix 19	AC1	c	288	301	Right-handed alpha
Helix 20	AC2	c	309	321	Right-handed alpha
Helix 21	AC3	c	334	351	Right-handed alpha
Helix 22	AC4	c	380	407	Right-handed alpha
Helix 23	AC5	c	413	417	Right-handed 310
Helix 24	AC6	c	420	434	Right-handed alpha
Helix 25	AC7	c	444	453	Right-handed alpha
Helix 26	AC8	c	470	474	Right-handed 310
Helix 27	AC9	c	476	480	Right-handed 310
Helix 28	AD1	c	532	538	Right-handed alpha
Helix 29	AD2	c	564	566	Right-handed 310
Helix 30	AD3	c	582	587	Right-handed 310
Helix 31	AD4	c	590	594	Right-handed 310
Helix 32	AD5	c	596	600	Right-handed 310
Helix 33	AD6	c	601	613	Right-handed alpha
Helix 34	AD7	c	629	639	Right-handed alpha
Helix 35	AD8	c	739	744	Right-handed alpha
Helix 36	AD9	c	815	826	Right-handed alpha
Helix 37	AE1	c	921	926	Right-handed alpha
Helix 38	AE2	c	928	943	Right-handed alpha
Helix 39	AE3	c	953	957	Right-handed 310
Helix 40	AE4	c	960	964	Right-handed 310
Helix 41	AE5	c	981	990	Right-handed alpha
Helix 42	AE6	c	1036	1041	Right-handed alpha
Helix 43	AE7	c	1069	1080	Right-handed alpha
Helix 44	AE8	c	1081	1091	Right-handed alpha
Helix 45	AE9	c	1095	1108	Right-handed alpha
Helix 46	AF1	c	1118	1131	Right-handed alpha
Helix 47	AF2	d	16	23	Right-handed alpha
Helix 48	AF3	d	84	90	Right-handed 310
Helix 49	AF4	d	103	108	Right-handed alpha
Helix 50	AF5	d	112	119	Right-handed alpha
Helix 51	AF6	d	121	130	Right-handed alpha
Helix 52	AF7	d	140	147	Right-handed alpha
Helix 53	AF8	d	147	188	Right-handed alpha
Helix 54	AF9	d	190	228	Right-handed alpha
Helix 55	AG1	d	237	248	Right-handed alpha
Helix 56	AG2	d	257	268	Right-handed alpha
Helix 57	AG3	d	269	282	Right-handed alpha
Helix 58	AG4	d	285	306	Right-handed alpha
Helix 59	AG5	d	308	311	Right-handed 310
Helix 60	AG6	d	321	325	Right-handed 310
Helix 61	AG7	d	338	361	Right-handed alpha
Helix 62	AG8	d	363	383	Right-handed alpha
Helix 63	AG9	d	402	406	Right-handed 310
Helix 64	AH1	d	411	418	Right-handed alpha
Helix 65	AH2	d	445	452	Right-handed alpha
Helix 66	AH3	d	452	463	Right-handed alpha
Helix 67	AH4	d	468	479	Right-handed alpha
Helix 68	AH5	d	482	491	Right-handed alpha
Helix 69	AH6	d	505	507	Right-handed 310
Helix 70	AH7	d	528	533	Right-handed alpha
Helix 71	AH8	d	548	558	Right-handed alpha
Helix 72	AH9	d	560	564	Right-handed 310
Helix 73	AI1	d	579	590	Right-handed alpha
Helix 74	AI2	d	614	625	Right-handed alpha
Helix 75	AI3	d	643	651	Right-handed alpha
Helix 76	AI4	d	667	675	Right-handed alpha
Helix 77	AI5	d	689	704	Right-handed alpha
Helix 78	AI6	d	705	725	Right-handed alpha
Helix 79	AI7	d	741	762	Right-handed alpha
Helix 80	AI8	d	766	793	Right-handed alpha
Helix 81	AI9	d	797	805	Right-handed alpha
Helix 82	AJ1	d	810	819	Right-handed alpha
Helix 83	AJ2	d	845	881	Right-handed alpha
Helix 84	AJ3	d	882	884	Right-handed 310
Helix 85	AJ4	d	915	920	Right-handed alpha
Helix 86	AJ5	d	945	956	Right-handed alpha
Helix 87	AJ6	d	964	968	Right-handed 310
Helix 88	AJ7	d	975	980	Right-handed alpha
Helix 89	AJ8	d	994	1005	Right-handed alpha
Helix 90	AJ9	d	1006	1008	Right-handed 310
Helix 91	AK1	d	1027	1036	Right-handed alpha
Helix 92	AK2	d	1117	1126	Right-handed alpha
Helix 93	AK3	d	1126	1146	Right-handed alpha
Helix 94	AK4	d	1151	1162	Right-handed alpha
Helix 95	AK5	d	1183	1196	Right-handed alpha
Helix 96	AK6	d	1209	1217	Right-handed alpha
Helix 97	AK7	d	1219	1227	Right-handed alpha
Helix 98	AK8	d	1228	1240	Right-handed alpha
Helix 99	AK9	d	1247	1255	Right-handed alpha
Helix 100	AL1	d	1260	1263	Right-handed 310
Helix 101	AL2	d	1264	1269	Right-handed alpha
Helix 102	AL3	d	1275	1283	Right-handed alpha
Helix 103	AL4	e	39	45	Right-handed alpha
Helix 104	AL5	e	49	70	Right-handed alpha
Helix 105	AL6	e	90	101	Right-handed alpha
Helix 106	AL7	f	25	35	Right-handed alpha
Helix 107	AL8	f	41	65	Right-handed alpha
Helix 108	AL9	f	69	106	Right-handed alpha
Helix 109	AM1	f	111	128	Right-handed alpha
Helix 110	AM2	f	137	157	Right-handed alpha
Helix 111	AM3	f	164	186	Right-handed alpha
Helix 112	AM4	f	190	199	Right-handed alpha
Helix 113	AM5	f	201	211	Right-handed alpha
Helix 114	AM6	f	229	234	Right-handed 310
Helix 115	AM7	f	240	246	Right-handed alpha
Helix 116	AM8	f	246	262	Right-handed alpha
Helix 117	AM9	f	263	275	Right-handed alpha
Helix 118	AN1	f	283	292	Right-handed alpha
Helix 119	AN2	f	296	310	Right-handed alpha
Helix 120	AN3	f	312	319	Right-handed alpha

There are 40 sheets in PDB entry 9FJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	8	13	first strand
Strand 2	a	18	26	anti-parallel
Strand 3	a	190	198	anti-parallel
Strand 4	a	171	180	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	93	99	first strand
Strand 2	a	134	143	anti-parallel
Strand 3	a	48	56	anti-parallel
Strand 4	a	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	85	87	first strand
Strand 2	a	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	103	106	first strand
Strand 2	a	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	145	147	first strand
Strand 2	a	166	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	8	12	first strand
Strand 2	b	18	26	anti-parallel
Strand 3	b	190	198	anti-parallel
Strand 4	b	171	178	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	93	100	first strand
Strand 2	b	133	147	anti-parallel
Strand 3	b	47	54	anti-parallel
Strand 4	b	162	163	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	93	100	first strand
Strand 2	b	133	147	anti-parallel
Strand 3	b	166	168	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	85	86	first strand
Strand 2	b	117	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	103	106	first strand
Strand 2	b	124	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	39	40	first strand
Strand 2	c	972	973	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	96	97	first strand
Strand 2	c	103	112	anti-parallel
Strand 3	c	131	141	anti-parallel
Strand 4	c	146	157	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	166	168	first strand
Strand 2	c	171	175	anti-parallel
Strand 3	c	437	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	376	379	first strand
Strand 2	c	177	181	anti-parallel
Strand 3	c	454	456	parallel
Strand 4	c	497	499	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	184	191	first strand
Strand 2	c	198	205	anti-parallel
Strand 3	c	212	215	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	223	224	first strand
Strand 2	c	232	233	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	354	355	first strand
Strand 2	c	363	364	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	505	506	first strand
Strand 2	c	512	518	anti-parallel
Strand 3	c	529	531	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	505	506	first strand
Strand 2	c	512	518	anti-parallel
Strand 3	c	578	579	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	541	542	first strand
Strand 2	c	558	562	anti-parallel
Strand 3	c	568	572	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	667	671	first strand
Strand 2	c	657	662	anti-parallel
Strand 3	c	648	653	anti-parallel
Strand 4	c	695	696	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	676	677	first strand
Strand 2	c	683	684	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	687	688	first strand
Strand 2	c	703	704	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	1007	1008	first strand
Strand 2	c	1023	1032	anti-parallel
Strand 3	c	884	887	anti-parallel
Strand 4	c	892	899	anti-parallel
Strand 5	c	734	738	parallel
Strand 6	c	915	917	anti-parallel
Strand 7	c	717	723	parallel
Strand 8	c	1023	1032	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	765	766	first strand
Strand 2	c	749	762	anti-parallel
Strand 3	c	865	877	anti-parallel
Strand 4	c	846	854	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	768	769	first strand
Strand 2	c	805	807	anti-parallel
Strand 3	c	833	834	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	801	803	first strand
Strand 2	c	837	838	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	1042	1044	first strand
Strand 2	d	425	432	anti-parallel
Strand 3	d	540	544	anti-parallel
Strand 4	d	496	499	anti-parallel
Strand 5	d	509	517	anti-parallel
Strand 6	d	440	444	parallel
Strand 7	d	522	524	anti-parallel
Strand 8	d	425	432	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	1066	1068	first strand
Strand 2	d	420	422	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	1133	1138	first strand
Strand 2	d	9	14	anti-parallel
Strand 3	d	1242	1244	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	93	94	first strand
Strand 2	d	318	319	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	101	102	first strand
Strand 2	d	313	314	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	234	235	first strand
Strand 2	d	134	139	anti-parallel
Strand 3	d	252	255	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	327	330	first strand
Strand 2	d	334	337	anti-parallel
Strand 3	f	216	217	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	611	612	first strand
Strand 2	d	633	637	parallel
Strand 3	d	662	666	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	897	900	first strand
Strand 2	d	959	962	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	929	930	first strand
Strand 2	d	936	938	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	1075	1080	first strand
Strand 2	d	1061	1068	anti-parallel
Strand 3	d	1051	1053	anti-parallel
Strand 4	d	1104	1105	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	1180	1182	first strand
Strand 2	d	1164	1169	anti-parallel
Strand 3	d	1202	1206	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	1271	1274	first strand
Strand 2	e	104	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJP