Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FJU entry

There are 26 chains in PDB entry 9FJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	GLU 72
A	GLY 74	PHE 375
B	ILE 5	GLU 72
B	GLY 74	PHE 375
C	ILE 5	GLU 72
C	GLY 74	PHE 375
D	ILE 5	GLU 72
D	GLY 74	PHE 375
E	LEU 1	THR 260
F	LEU 1	THR 260
G	TRP 1	TRP 1
G	ALA 3	ALA 3
G	CYS 5	CYS 5
G	ALA 7	ALA 7
H	TRP 1	TRP 1
H	ALA 3	ALA 3
H	CYS 5	CYS 5
H	ALA 7	ALA 7
I	TRP 1	TRP 1
I	ALA 3	ALA 3
I	CYS 5	CYS 5
I	ALA 7	ALA 7
J	TRP 1	TRP 1
J	ALA 3	ALA 3
J	CYS 5	CYS 5
J	ALA 7	ALA 7

There are 94 helices in PDB entry 9FJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	91	Right-handed alpha
Helix 3	AA3	A	112	126	Right-handed alpha
Helix 4	AA4	A	137	146	Right-handed alpha
Helix 5	AA5	A	181	197	Right-handed alpha
Helix 6	AA6	A	202	216	Right-handed alpha
Helix 7	AA7	A	222	232	Right-handed alpha
Helix 8	AA8	A	252	260	Right-handed alpha
Helix 9	AA9	A	261	262	Right-handed 310
Helix 10	AB1	A	263	268	Right-handed 310
Helix 11	AB2	A	273	285	Right-handed alpha
Helix 12	AB3	A	286	296	Right-handed alpha
Helix 13	AB4	A	301	305	Right-handed 310
Helix 14	AB5	A	308	321	Right-handed alpha
Helix 15	AB6	A	334	336	Right-handed 310
Helix 16	AB7	A	337	349	Right-handed alpha
Helix 17	AB8	A	350	356	Right-handed 310
Helix 18	AB9	A	359	366	Right-handed alpha
Helix 19	AC1	A	367	371	Right-handed 310
Helix 20	AC2	B	55	61	Right-handed alpha
Helix 21	AC3	B	78	92	Right-handed alpha
Helix 22	AC4	B	112	126	Right-handed alpha
Helix 23	AC5	B	139	146	Right-handed alpha
Helix 24	AC6	B	181	197	Right-handed alpha
Helix 25	AC7	B	202	217	Right-handed alpha
Helix 26	AC8	B	223	232	Right-handed alpha
Helix 27	AC9	B	252	257	Right-handed alpha
Helix 28	AD1	B	258	262	Right-handed 310
Helix 29	AD2	B	263	267	Right-handed 310
Helix 30	AD3	B	273	285	Right-handed alpha
Helix 31	AD4	B	286	288	Right-handed 310
Helix 32	AD5	B	289	296	Right-handed alpha
Helix 33	AD6	B	301	305	Right-handed 310
Helix 34	AD7	B	308	321	Right-handed alpha
Helix 35	AD8	B	334	336	Right-handed 310
Helix 36	AD9	B	337	349	Right-handed alpha
Helix 37	AE1	B	350	354	Right-handed 310
Helix 38	AE2	B	359	366	Right-handed alpha
Helix 39	AE3	B	367	372	Right-handed 310
Helix 40	AE4	C	55	61	Right-handed alpha
Helix 41	AE5	C	62	65	Right-handed 310
Helix 42	AE6	C	79	92	Right-handed alpha
Helix 43	AE7	C	112	126	Right-handed alpha
Helix 44	AE8	C	137	146	Right-handed alpha
Helix 45	AE9	C	172	175	Right-handed 310
Helix 46	AF1	C	181	197	Right-handed alpha
Helix 47	AF2	C	202	214	Right-handed alpha
Helix 48	AF3	C	222	231	Right-handed alpha
Helix 49	AF4	C	252	257	Right-handed alpha
Helix 50	AF5	C	263	267	Right-handed 310
Helix 51	AF6	C	273	284	Right-handed alpha
Helix 52	AF7	C	289	296	Right-handed alpha
Helix 53	AF8	C	301	305	Right-handed 310
Helix 54	AF9	C	308	321	Right-handed alpha
Helix 55	AG1	C	337	349	Right-handed alpha
Helix 56	AG2	C	350	356	Right-handed 310
Helix 57	AG3	C	359	366	Right-handed alpha
Helix 58	AG4	C	367	372	Right-handed 310
Helix 59	AG5	D	55	61	Right-handed alpha
Helix 60	AG6	D	78	92	Right-handed alpha
Helix 61	AG7	D	112	126	Right-handed alpha
Helix 62	AG8	D	137	146	Right-handed alpha
Helix 63	AG9	D	172	175	Right-handed 310
Helix 64	AH1	D	181	197	Right-handed alpha
Helix 65	AH2	D	202	217	Right-handed alpha
Helix 66	AH3	D	222	233	Right-handed alpha
Helix 67	AH4	D	252	257	Right-handed alpha
Helix 68	AH5	D	258	262	Right-handed 310
Helix 69	AH6	D	263	268	Right-handed 310
Helix 70	AH7	D	273	284	Right-handed alpha
Helix 71	AH8	D	289	296	Right-handed alpha
Helix 72	AH9	D	308	321	Right-handed alpha
Helix 73	AI1	D	337	349	Right-handed alpha
Helix 74	AI2	D	350	356	Right-handed 310
Helix 75	AI3	D	359	366	Right-handed alpha
Helix 76	AI4	D	368	373	Right-handed alpha
Helix 77	AI5	E	12	18	Right-handed alpha
Helix 78	AI6	E	19	31	Right-handed alpha
Helix 79	AI7	E	45	56	Right-handed alpha
Helix 80	AI8	E	136	138	Right-handed 310
Helix 81	AI9	E	139	158	Right-handed alpha
Helix 82	AJ1	E	177	182	Right-handed alpha
Helix 83	AJ2	E	184	189	Right-handed alpha
Helix 84	AJ3	E	218	225	Right-handed alpha
Helix 85	AJ4	E	234	239	Right-handed alpha
Helix 86	AJ5	E	242	250	Right-handed alpha
Helix 87	AJ6	F	12	17	Right-handed alpha
Helix 88	AJ7	F	19	30	Right-handed alpha
Helix 89	AJ8	F	45	54	Right-handed alpha
Helix 90	AJ9	F	139	155	Right-handed alpha
Helix 91	AK1	F	177	184	Right-handed alpha
Helix 92	AK2	F	218	225	Right-handed alpha
Helix 93	AK3	F	234	239	Right-handed alpha
Helix 94	AK4	F	242	250	Right-handed alpha

There are 27 sheets in PDB entry 9FJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	134	136	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	357	358	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	20	anti-parallel
Strand 3	B	8	10	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	53	54	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	E	65	67	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	162	anti-parallel
Strand 3	C	151	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	169	170	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	20	anti-parallel
Strand 3	D	8	10	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	162	anti-parallel
Strand 3	D	151	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	166	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	34	37	anti-parallel
Strand 3	E	2	6	parallel
Strand 4	E	255	258	anti-parallel
Strand 5	E	231	232	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	95	first strand
Strand 2	E	114	120	anti-parallel
Strand 3	E	127	132	anti-parallel
Strand 4	E	163	165	parallel
Strand 5	E	215	217	anti-parallel
Strand 6	E	193	194	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	81	84	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	2	11	parallel
Strand 5	F	255	258	anti-parallel
Strand 6	F	231	232	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	96	first strand
Strand 2	F	114	120	anti-parallel
Strand 3	F	127	132	anti-parallel
Strand 4	F	163	168	parallel
Strand 5	F	212	217	anti-parallel
Strand 6	F	192	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FJU