Analysis of interatomic Contacts of Structural Units in PDB entry:
9FKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FKA entry

There are 2 chains in PDB entry 9FKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 468
B
 MET 1PRO 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9FKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
21 43Right-handed alpha
Helix 3
AA3
A
44 80Right-handed alpha
Helix 4
AA4
A
80 102Right-handed alpha
Helix 5
AA5
A
102 116Right-handed alpha
Helix 6
AA6
A
121 152Right-handed alpha
Helix 7
AA7
A
169 175Right-handed alpha
Helix 8
AA8
A
176 212Right-handed alpha
Helix 9
AA9
A
215 255Right-handed alpha
Helix 10
AB1
A
255 263Right-handed alpha
Helix 11
AB2
A
297 304Right-handed alpha
Helix 12
AB3
A
313 325Right-handed alpha
Helix 13
AB4
A
333 347Right-handed alpha
Helix 14
AB5
A
348 362Right-handed alpha
Helix 15
AB6
A
363 366Right-handed 310
Helix 16
AB7
A
370 381Right-handed alpha
Helix 17
AB8
A
381 398Right-handed alpha
Helix 18
AB9
A
426 459Right-handed alpha
Helix 19
AC1
A
461 465Right-handed 310
Helix 20
AC2
B
2 39Right-handed alpha
Helix 21
AC3
B
42 54Right-handed alpha
Helix 22
AC4
B
57 76Right-handed alpha
Helix 23
AC5
B
76 87Right-handed alpha
Helix 24
AC6
B
87 108Right-handed alpha
Helix 25
AC7
B
113 145Right-handed alpha
Helix 26
AC8
B
157 162Right-handed alpha
Helix 27
AC9
B
163 189Right-handed alpha
Helix 28
AD1
B
191 224Right-handed alpha
Helix 29
AD2
B
227 248Right-handed alpha
Helix 30
AD3
B
251 273Right-handed alpha
Helix 31
AD4
B
284 288Right-handed 310
Helix 32
AD5
B
297 326Right-handed alpha
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There are 6 sheets in PDB entry 9FKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
164 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
291 294anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
416 417anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
341 342parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
289 290anti-parallel
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