Analysis of interatomic Contacts of Structural Units in PDB entry:
9FKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FKD entry

There are 5 chains in PDB entry 9FKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 1GLY 62
H
 GLY 3ASP 226
L
 GLY 3CYS 222
K
 GLY 3CYS 217
I
 GLY 3CYS 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9FKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 20Right-handed alpha
Helix 2
AA2
B
23 42Right-handed alpha
Helix 3
AA3
B
43 62Right-handed alpha
Helix 4
AA4
H
31 34Right-handed 310
Helix 5
AA5
H
65 68Right-handed 310
Helix 6
AA6
H
90 94Right-handed 310
Helix 7
AA7
H
165 167Right-handed 310
Helix 8
AA8
H
196 198Right-handed 310
Helix 9
AA9
L
87 91Right-handed 310
Helix 10
AB1
L
129 134Right-handed alpha
Helix 11
AB2
L
191 197Right-handed alpha
Helix 12
AB3
K
82 86Right-handed 310
Helix 13
AB4
K
124 131Right-handed alpha
Helix 14
AB5
K
186 191Right-handed alpha
Helix 15
AB6
I
65 68Right-handed 310
Helix 16
AB7
I
90 94Right-handed 310
Helix 17
AB8
I
135 139Right-handed 310
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There are 22 sheets in PDB entry 9FKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 9first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
116 120parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
48 55anti-parallel
Strand 6
H
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
116 120parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
109 112anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 154anti-parallel
Strand 3
H
185 194anti-parallel
Strand 4
H
173 174anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 154anti-parallel
Strand 3
H
185 194anti-parallel
Strand 4
H
178 179anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
160 163first strand
Strand 2
H
203 209anti-parallel
Strand 3
H
214 220anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 10first strand
Strand 2
L
22 27anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
13 16first strand
Strand 2
L
110 114parallel
Strand 3
L
93 98anti-parallel
Strand 4
L
41 46anti-parallel
Strand 5
L
53 57anti-parallel
Strand 6
L
61 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
13 16first strand
Strand 2
L
110 114parallel
Strand 3
L
93 98anti-parallel
Strand 4
L
105 106anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
122 126first strand
Strand 2
L
137 147anti-parallel
Strand 3
L
181 190anti-parallel
Strand 4
L
167 171anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
161 162first strand
Strand 2
L
152 158anti-parallel
Strand 3
L
199 206anti-parallel
Strand 4
L
213 218anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
7 10first strand
Strand 2
K
22 28anti-parallel
Strand 3
K
73 78anti-parallel
Strand 4
K
65 70anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
13 16first strand
Strand 2
K
105 109parallel
Strand 3
K
88 93anti-parallel
Strand 4
K
36 41anti-parallel
Strand 5
K
48 52anti-parallel
Strand 6
K
56 57anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
13 16first strand
Strand 2
K
105 109parallel
Strand 3
K
88 93anti-parallel
Strand 4
K
100 101anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
117 121first strand
Strand 2
K
132 142anti-parallel
Strand 3
K
176 185anti-parallel
Strand 4
K
162 166anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
147 153first strand
Strand 2
K
194 201anti-parallel
Strand 3
K
208 213anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 10first strand
Strand 2
I
20 28anti-parallel
Strand 3
I
81 87anti-parallel
Strand 4
I
71 76anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
13 15first strand
Strand 2
I
115 119parallel
Strand 3
I
95 102anti-parallel
Strand 4
I
36 42anti-parallel
Strand 5
I
48 54anti-parallel
Strand 6
I
61 63anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
13 15first strand
Strand 2
I
115 119parallel
Strand 3
I
95 102anti-parallel
Strand 4
I
110 111anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
128 132first strand
Strand 2
I
143 153anti-parallel
Strand 3
I
182 192anti-parallel
Strand 4
I
171 173anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
128 132first strand
Strand 2
I
143 153anti-parallel
Strand 3
I
182 192anti-parallel
Strand 4
I
177 179anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
159 162first strand
Strand 2
I
202 207anti-parallel
Strand 3
I
212 217anti-parallel
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