Analysis of interatomic Contacts of Structural Units in PDB entry:
9FKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FKN entry

There are 2 chains in PDB entry 9FKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 94GLU 511
B
 VAL 4SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9FKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 129Right-handed alpha
Helix 2
AA2
A
140 157Right-handed alpha
Helix 3
AA3
A
157 169Right-handed alpha
Helix 4
AA4
A
169 191Right-handed alpha
Helix 5
AA5
A
194 223Right-handed alpha
Helix 6
AA6
A
227 252Right-handed alpha
Helix 7
AA7
A
258 260Right-handed 310
Helix 8
AA8
A
261 277Right-handed alpha
Helix 9
AA9
A
278 280Right-handed 310
Helix 10
AB1
A
314 317Right-handed 310
Helix 11
AB2
A
318 333Right-handed alpha
Helix 12
AB3
A
336 350Right-handed alpha
Helix 13
AB4
A
357 379Right-handed alpha
Helix 14
AB5
A
382 385Right-handed 310
Helix 15
AB6
A
386 404Right-handed alpha
Helix 16
AB7
A
409 429Right-handed alpha
Helix 17
AB8
A
430 440Right-handed alpha
Helix 18
AB9
A
443 455Right-handed alpha
Helix 19
AC1
A
455 474Right-handed alpha
Helix 20
AC2
A
476 484Right-handed alpha
Helix 21
AC3
A
484 495Right-handed alpha
Helix 22
AC4
A
499 511Right-handed alpha
Helix 23
AC5
B
30 36Right-handed alpha
Helix 24
AC6
B
66 69Right-handed 310
Helix 25
AC7
B
91 95Right-handed 310
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There are 3 sheets in PDB entry 9FKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
118 122parallel
Strand 3
B
96 106anti-parallel
Strand 4
B
37 44anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
62 64anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
118 122parallel
Strand 3
B
96 106anti-parallel
Strand 4
B
109 114anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 25first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
72 77anti-parallel
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