Analysis of interatomic Contacts of Structural Units in PDB entry:
9FKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FKP entry

There are 5 chains in PDB entry 9FKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 112
B
 ALA 1SER 112
D
 PHE 47TYR 153
E
 VAL 45TYR 153
C
 CYS 31GLU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9FKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
B
3 10Right-handed alpha
Helix 4
AA4
B
56 69Right-handed alpha
Helix 5
AA5
E
142 144Right-handed 310
Helix 6
AA6
C
58 62Right-handed 310
Helix 7
AA7
C
143 150Right-handed alpha
Helix 8
AA8
C
160 173Right-handed alpha
Helix 9
AA9
C
305 311Right-handed alpha
Helix 10
AB1
C
325 336Right-handed alpha
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There are 16 sheets in PDB entry 9FKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
43 45anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
38 40anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
109 112anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 106first strand
Strand 2
A
83 92anti-parallel
Strand 3
D
75 76parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
43 45anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
38 40anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 92first strand
Strand 2
B
95 112anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
147 148anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 102first strand
Strand 2
D
83 88anti-parallel
Strand 3
D
133 138anti-parallel
Strand 4
D
124 126anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 52first strand
Strand 2
E
74 76anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 58first strand
Strand 2
E
95 102anti-parallel
Strand 3
E
83 90anti-parallel
Strand 4
E
132 138anti-parallel
Strand 5
E
122 126anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
67 68first strand
Strand 2
E
146 147anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
223 225anti-parallel
Strand 3
C
343 349anti-parallel
Strand 4
C
235 243parallel
Strand 5
C
271 277parallel
Strand 6
C
290 298parallel
Strand 7
C
267 268parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
223 225anti-parallel
Strand 3
C
343 349anti-parallel
Strand 4
C
235 243parallel
Strand 5
C
271 277parallel
Strand 6
C
290 298parallel
Strand 7
C
312 314parallel
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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 141first strand
Strand 2
C
115 120parallel
Strand 3
C
86 93parallel
Strand 4
C
187 191parallel
Strand 5
C
212 219anti-parallel
Strand 6
C
42 50anti-parallel
Strand 7
C
352 357anti-parallel
Strand 8
C
252 260parallel
Strand 9
C
281 287parallel
Strand 10
C
302 304parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
177 182anti-parallel
Strand 3
C
66 73parallel
Strand 4
C
104 108parallel
Strand 5
C
130 133parallel
Strand 6
C
151 154parallel
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