Analysis of interatomic Contacts of Structural Units in PDB entry:
9FKS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FKS entry

There are 16 chains in PDB entry 9FKS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	ALA 2	PRO 434
b	ALA 212	GLU 450
c	HIS 16	GLY 195
d	ALA 2	GLU 435
e	ALA 212	GLU 450
f	ASP 15	GLY 195
g	ASP 11	ARG 554
h	GLN 30	ALA 281
i	ALA 2	ARG 274
j	THR 8	SER 50
k	ASP 11	ARG 554
l	GLN 30	ALA 281
m	ALA 2	ARG 274
n	THR 8	SER 50
o	PHE 2	GLU 55
p	PHE 2	GLU 55

There are163 helices in PDB entry 9FKS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	13	21	Right-handed alpha
Helix 2	AA2	a	24	34	Right-handed alpha
Helix 3	AA3	a	42	45	Right-handed 310
Helix 4	AA4	a	46	67	Right-handed alpha
Helix 5	AA5	a	75	84	Right-handed alpha
Helix 6	AA6	a	89	118	Right-handed alpha
Helix 7	AA7	a	125	149	Right-handed alpha
Helix 8	AA8	a	152	169	Right-handed alpha
Helix 9	AA9	a	172	182	Right-handed alpha
Helix 10	AB1	a	187	220	Right-handed alpha
Helix 11	AB2	a	233	240	Right-handed alpha
Helix 12	AB3	a	246	270	Right-handed alpha
Helix 13	AB4	a	271	274	Right-handed 310
Helix 14	AB5	a	276	281	Right-handed 310
Helix 15	AB6	a	295	297	Right-handed 310
Helix 16	AB7	a	298	308	Right-handed alpha
Helix 17	AB8	a	312	322	Right-handed alpha
Helix 18	AB9	a	327	345	Right-handed alpha
Helix 19	AC1	a	345	350	Right-handed alpha
Helix 20	AC2	a	356	359	Right-handed 310
Helix 21	AC3	a	360	383	Right-handed alpha
Helix 22	AC4	a	388	406	Right-handed alpha
Helix 23	AC5	a	406	415	Right-handed alpha
Helix 24	AC6	a	423	432	Right-handed alpha
Helix 25	AC7	b	230	244	Right-handed alpha
Helix 26	AC8	b	245	248	Right-handed 310
Helix 27	AC9	b	255	261	Right-handed 310
Helix 28	AD1	b	268	277	Right-handed alpha
Helix 29	AD2	b	312	317	Right-handed alpha
Helix 30	AD3	b	327	334	Right-handed alpha
Helix 31	AD4	b	336	347	Right-handed alpha
Helix 32	AD5	b	391	408	Right-handed alpha
Helix 33	AD6	b	410	445	Right-handed alpha
Helix 34	AD7	c	22	46	Right-handed alpha
Helix 35	AD8	c	50	56	Right-handed alpha
Helix 36	AD9	c	87	96	Right-handed alpha
Helix 37	AE1	c	98	102	Right-handed 310
Helix 38	AE2	c	118	122	Right-handed 310
Helix 39	AE3	d	13	21	Right-handed alpha
Helix 40	AE4	d	24	34	Right-handed alpha
Helix 41	AE5	d	42	45	Right-handed 310
Helix 42	AE6	d	46	67	Right-handed alpha
Helix 43	AE7	d	75	87	Right-handed alpha
Helix 44	AE8	d	89	118	Right-handed alpha
Helix 45	AE9	d	125	149	Right-handed alpha
Helix 46	AF1	d	152	164	Right-handed alpha
Helix 47	AF2	d	165	169	Right-handed 310
Helix 48	AF3	d	171	182	Right-handed alpha
Helix 49	AF4	d	187	220	Right-handed alpha
Helix 50	AF5	d	233	240	Right-handed alpha
Helix 51	AF6	d	246	270	Right-handed alpha
Helix 52	AF7	d	276	281	Right-handed 310
Helix 53	AF8	d	295	297	Right-handed 310
Helix 54	AF9	d	298	308	Right-handed alpha
Helix 55	AG1	d	312	322	Right-handed alpha
Helix 56	AG2	d	327	345	Right-handed alpha
Helix 57	AG3	d	345	350	Right-handed alpha
Helix 58	AG4	d	356	360	Right-handed 310
Helix 59	AG5	d	362	383	Right-handed alpha
Helix 60	AG6	d	388	406	Right-handed alpha
Helix 61	AG7	d	406	415	Right-handed alpha
Helix 62	AG8	d	423	433	Right-handed alpha
Helix 63	AG9	e	230	244	Right-handed alpha
Helix 64	AH1	e	245	248	Right-handed 310
Helix 65	AH2	e	255	260	Right-handed 310
Helix 66	AH3	e	268	277	Right-handed alpha
Helix 67	AH4	e	312	317	Right-handed alpha
Helix 68	AH5	e	327	334	Right-handed alpha
Helix 69	AH6	e	336	347	Right-handed alpha
Helix 70	AH7	e	391	408	Right-handed alpha
Helix 71	AH8	e	410	445	Right-handed alpha
Helix 72	AH9	f	22	46	Right-handed alpha
Helix 73	AI1	f	50	56	Right-handed alpha
Helix 74	AI2	f	87	96	Right-handed alpha
Helix 75	AI3	f	98	102	Right-handed 310
Helix 76	AI4	f	118	122	Right-handed 310
Helix 77	AI5	g	17	23	Right-handed alpha
Helix 78	AI6	g	27	59	Right-handed alpha
Helix 79	AI7	g	83	102	Right-handed alpha
Helix 80	AI8	g	102	108	Right-handed alpha
Helix 81	AI9	g	110	121	Right-handed alpha
Helix 82	AJ1	g	127	151	Right-handed alpha
Helix 83	AJ2	g	153	157	Right-handed 310
Helix 84	AJ3	g	169	174	Right-handed alpha
Helix 85	AJ4	g	177	207	Right-handed alpha
Helix 86	AJ5	g	213	217	Right-handed 310
Helix 87	AJ6	g	218	252	Right-handed alpha
Helix 88	AJ7	g	257	261	Right-handed 310
Helix 89	AJ8	g	263	276	Right-handed alpha
Helix 90	AJ9	g	276	298	Right-handed alpha
Helix 91	AK1	g	304	320	Right-handed alpha
Helix 92	AK2	g	321	328	Right-handed 310
Helix 93	AK3	g	333	347	Right-handed alpha
Helix 94	AK4	g	347	363	Right-handed alpha
Helix 95	AK5	g	370	395	Right-handed alpha
Helix 96	AK6	g	395	403	Right-handed alpha
Helix 97	AK7	g	405	416	Right-handed alpha
Helix 98	AK8	g	419	437	Right-handed alpha
Helix 99	AK9	g	441	470	Right-handed alpha
Helix 100	AL1	g	479	481	Right-handed 310
Helix 101	AL2	g	482	514	Right-handed alpha
Helix 102	AL3	g	529	534	Right-handed 310
Helix 103	AL4	g	548	553	Right-handed alpha
Helix 104	AL5	h	54	90	Right-handed alpha
Helix 105	AL6	h	103	134	Right-handed alpha
Helix 106	AL7	h	169	177	Right-handed 310
Helix 107	AL8	h	179	183	Right-handed 310
Helix 108	AL9	h	215	218	Right-handed 310
Helix 109	AM1	h	252	256	Right-handed 310
Helix 110	AM2	h	264	279	Right-handed alpha
Helix 111	AM3	i	16	37	Right-handed alpha
Helix 112	AM4	i	49	76	Right-handed alpha
Helix 113	AM5	i	80	115	Right-handed alpha
Helix 114	AM6	i	140	167	Right-handed alpha
Helix 115	AM7	i	168	195	Right-handed alpha
Helix 116	AM8	i	204	237	Right-handed alpha
Helix 117	AM9	i	245	269	Right-handed alpha
Helix 118	AN1	j	17	49	Right-handed alpha
Helix 119	AN2	k	12	16	Right-handed 310
Helix 120	AN3	k	17	23	Right-handed alpha
Helix 121	AN4	k	27	59	Right-handed alpha
Helix 122	AN5	k	83	102	Right-handed alpha
Helix 123	AN6	k	102	108	Right-handed alpha
Helix 124	AN7	k	110	121	Right-handed alpha
Helix 125	AN8	k	127	151	Right-handed alpha
Helix 126	AN9	k	169	174	Right-handed alpha
Helix 127	AO1	k	177	207	Right-handed alpha
Helix 128	AO2	k	213	217	Right-handed 310
Helix 129	AO3	k	218	251	Right-handed alpha
Helix 130	AO4	k	257	261	Right-handed 310
Helix 131	AO5	k	263	276	Right-handed alpha
Helix 132	AO6	k	276	298	Right-handed alpha
Helix 133	AO7	k	304	322	Right-handed alpha
Helix 134	AO8	k	323	331	Right-handed 310
Helix 135	AO9	k	333	363	Right-handed alpha
Helix 136	AP1	k	370	395	Right-handed alpha
Helix 137	AP2	k	395	403	Right-handed alpha
Helix 138	AP3	k	405	416	Right-handed alpha
Helix 139	AP4	k	418	437	Right-handed alpha
Helix 140	AP5	k	441	470	Right-handed alpha
Helix 141	AP6	k	479	481	Right-handed 310
Helix 142	AP7	k	482	514	Right-handed alpha
Helix 143	AP8	k	529	534	Right-handed 310
Helix 144	AP9	k	548	553	Right-handed alpha
Helix 145	AQ1	l	30	34	Right-handed 310
Helix 146	AQ2	l	54	90	Right-handed alpha
Helix 147	AQ3	l	103	134	Right-handed alpha
Helix 148	AQ4	l	169	171	Right-handed 310
Helix 149	AQ5	l	172	177	Right-handed alpha
Helix 150	AQ6	l	179	183	Right-handed 310
Helix 151	AQ7	l	215	218	Right-handed 310
Helix 152	AQ8	l	252	255	Right-handed 310
Helix 153	AQ9	l	264	279	Right-handed alpha
Helix 154	AR1	m	16	37	Right-handed alpha
Helix 155	AR2	m	49	77	Right-handed alpha
Helix 156	AR3	m	80	115	Right-handed alpha
Helix 157	AR4	m	140	167	Right-handed alpha
Helix 158	AR5	m	168	196	Right-handed alpha
Helix 159	AR6	m	204	237	Right-handed alpha
Helix 160	AR7	m	245	269	Right-handed alpha
Helix 161	AR8	n	17	50	Right-handed alpha
Helix 162	AR9	o	3	32	Right-handed alpha
Helix 163	AS1	p	3	32	Right-handed alpha

There are 24 sheets in PDB entry 9FKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	38	first strand
Strand 2	a	241	243	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	280	282	first strand
Strand 2	b	289	291	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	348	355	first strand
Strand 2	b	358	363	anti-parallel
Strand 3	b	370	371	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	59	62	first strand
Strand 2	c	191	194	anti-parallel
Strand 3	c	184	188	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	71	76	first strand
Strand 2	c	79	85	anti-parallel
Strand 3	c	130	134	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	145	149	first strand
Strand 2	c	153	156	anti-parallel
Strand 3	c	163	165	anti-parallel
Strand 4	c	170	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	36	38	first strand
Strand 2	d	241	243	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	280	282	first strand
Strand 2	e	289	291	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	348	355	first strand
Strand 2	e	358	363	anti-parallel
Strand 3	e	370	371	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	59	62	first strand
Strand 2	f	191	194	anti-parallel
Strand 3	f	184	188	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	71	76	first strand
Strand 2	f	79	85	anti-parallel
Strand 3	f	130	134	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	145	149	first strand
Strand 2	f	153	156	anti-parallel
Strand 3	f	163	165	anti-parallel
Strand 4	f	170	172	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	438	439	first strand
Strand 2	g	515	516	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	38	40	first strand
Strand 2	h	239	243	parallel
Strand 3	h	258	263	anti-parallel
Strand 4	h	191	194	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	162	165	first strand
Strand 2	h	151	155	anti-parallel
Strand 3	h	141	148	anti-parallel
Strand 4	h	198	205	parallel
Strand 5	h	229	234	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	210	214	first strand
Strand 2	h	219	223	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	39	41	first strand
Strand 2	i	44	46	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	65	66	first strand
Strand 2	k	69	70	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	152	153	first strand
Strand 2	k	157	158	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	438	439	first strand
Strand 2	k	515	516	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	38	40	first strand
Strand 2	l	239	244	parallel
Strand 3	l	257	263	anti-parallel
Strand 4	l	191	194	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	161	165	first strand
Strand 2	l	151	156	anti-parallel
Strand 3	l	141	148	anti-parallel
Strand 4	l	198	205	parallel
Strand 5	l	229	234	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	210	214	first strand
Strand 2	l	219	223	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	39	41	first strand
Strand 2	m	44	46	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FKS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FKS