Analysis of interatomic Contacts of Structural Units in PDB entry:
9FM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FM5 entry

There are 6 chains in PDB entry 9FM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 277LYS 617
B
 TYR 277LYS 617
D
 ILE 3ALA 5
D
 ASP 7ASP 7
E
 ILE 3ALA 5
E
 ASP 7ASP 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9FM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
283 286Right-handed 310
Helix 2
AA2
A
287 294Right-handed alpha
Helix 3
AA3
A
295 297Right-handed 310
Helix 4
AA4
A
298 306Right-handed alpha
Helix 5
AA5
A
326 330Right-handed 310
Helix 6
AA6
A
333 338Right-handed alpha
Helix 7
AA7
A
371 382Right-handed alpha
Helix 8
AA8
A
412 426Right-handed alpha
Helix 9
AA9
A
441 454Right-handed alpha
Helix 10
AB1
A
475 479Right-handed 310
Helix 11
AB2
A
487 493Right-handed 310
Helix 12
AB3
A
547 566Right-handed alpha
Helix 13
AB4
A
570 581Right-handed alpha
Helix 14
AB5
A
599 610Right-handed alpha
Helix 15
AB6
B
283 286Right-handed 310
Helix 16
AB7
B
287 294Right-handed alpha
Helix 17
AB8
B
298 306Right-handed alpha
Helix 18
AB9
B
326 330Right-handed 310
Helix 19
AC1
B
333 338Right-handed alpha
Helix 20
AC2
B
371 382Right-handed alpha
Helix 21
AC3
B
412 426Right-handed alpha
Helix 22
AC4
B
441 454Right-handed alpha
Helix 23
AC5
B
475 479Right-handed 310
Helix 24
AC6
B
487 493Right-handed 310
Helix 25
AC7
B
547 566Right-handed alpha
Helix 26
AC8
B
570 581Right-handed alpha
Helix 27
AC9
B
586 589Right-handed 310
Helix 28
AD1
B
599 610Right-handed alpha
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There are 10 sheets in PDB entry 9FM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
398 403parallel
Strand 3
A
311 316parallel
Strand 4
A
430 433parallel
Strand 5
A
457 461parallel
Strand 6
A
497 505parallel
Strand 7
A
511 513anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
398 403parallel
Strand 3
A
311 316parallel
Strand 4
A
430 433parallel
Strand 5
A
457 461parallel
Strand 6
A
497 505parallel
Strand 7
A
526 529parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
D
3 5anti-parallel
Strand 3
A
435 436anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 537first strand
Strand 2
A
541 545anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
596 598anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
398 403parallel
Strand 3
B
311 316parallel
Strand 4
B
430 433parallel
Strand 5
B
457 461parallel
Strand 6
B
497 505parallel
Strand 7
B
511 513anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
398 403parallel
Strand 3
B
311 316parallel
Strand 4
B
430 433parallel
Strand 5
B
457 461parallel
Strand 6
B
497 505parallel
Strand 7
B
526 529parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
E
3 5anti-parallel
Strand 3
B
435 436anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
533 537first strand
Strand 2
B
541 545anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 584first strand
Strand 2
B
596 598anti-parallel
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