Analysis of interatomic Contacts of Structural Units in PDB entry:
9FM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FM9 entry

There are 4 chains in PDB entry 9FM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	PHE 508
B	GLY 11	PHE 508
C	GLY 11	LYS 504
D	GLY 58	LYS 504

There are 58 helices in PDB entry 9FM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	75	Right-handed alpha
Helix 2	AA2	A	78	95	Right-handed alpha
Helix 3	AA3	A	96	109	Right-handed alpha
Helix 4	AA4	A	111	136	Right-handed alpha
Helix 5	AA5	A	168	183	Right-handed alpha
Helix 6	AA6	A	196	207	Right-handed alpha
Helix 7	AA7	A	225	231	Right-handed alpha
Helix 8	AA8	A	243	256	Right-handed alpha
Helix 9	AA9	A	282	294	Right-handed alpha
Helix 10	AB1	A	295	301	Right-handed 310
Helix 11	AB2	A	315	329	Right-handed alpha
Helix 12	AB3	A	347	364	Right-handed alpha
Helix 13	AB4	A	378	384	Right-handed 310
Helix 14	AB5	A	398	403	Right-handed alpha
Helix 15	AB6	A	417	427	Right-handed alpha
Helix 16	AB7	A	440	451	Right-handed alpha
Helix 17	AB8	A	483	489	Right-handed 310
Helix 18	AB9	B	58	76	Right-handed alpha
Helix 19	AC1	B	80	96	Right-handed alpha
Helix 20	AC2	B	96	109	Right-handed alpha
Helix 21	AC3	B	111	118	Right-handed alpha
Helix 22	AC4	B	118	137	Right-handed alpha
Helix 23	AC5	B	170	183	Right-handed alpha
Helix 24	AC6	B	197	206	Right-handed alpha
Helix 25	AC7	B	226	231	Right-handed alpha
Helix 26	AC8	B	243	255	Right-handed alpha
Helix 27	AC9	B	282	293	Right-handed alpha
Helix 28	AD1	B	294	301	Right-handed 310
Helix 29	AD2	B	315	329	Right-handed alpha
Helix 30	AD3	B	347	365	Right-handed alpha
Helix 31	AD4	B	398	403	Right-handed alpha
Helix 32	AD5	B	417	427	Right-handed alpha
Helix 33	AD6	B	440	451	Right-handed alpha
Helix 34	AD7	B	483	488	Right-handed 310
Helix 35	AD8	C	58	75	Right-handed alpha
Helix 36	AD9	C	78	96	Right-handed alpha
Helix 37	AE1	C	96	109	Right-handed alpha
Helix 38	AE2	C	114	119	Right-handed alpha
Helix 39	AE3	C	119	137	Right-handed alpha
Helix 40	AE4	C	170	183	Right-handed alpha
Helix 41	AE5	C	197	207	Right-handed alpha
Helix 42	AE6	C	208	210	Right-handed 310
Helix 43	AE7	C	225	231	Right-handed alpha
Helix 44	AE8	C	275	279	Right-handed 310
Helix 45	AE9	C	283	293	Right-handed alpha
Helix 46	AF1	C	297	301	Right-handed 310
Helix 47	AF2	C	315	328	Right-handed alpha
Helix 48	AF3	C	347	365	Right-handed alpha
Helix 49	AF4	C	417	426	Right-handed alpha
Helix 50	AF5	C	440	451	Right-handed alpha
Helix 51	AF6	D	59	75	Right-handed alpha
Helix 52	AF7	D	78	96	Right-handed alpha
Helix 53	AF8	D	119	137	Right-handed alpha
Helix 54	AF9	D	170	184	Right-handed alpha
Helix 55	AG1	D	200	210	Right-handed alpha
Helix 56	AG2	D	417	425	Right-handed alpha
Helix 57	AG3	D	443	450	Right-handed alpha
Helix 58	AG4	D	483	487	Right-handed 310

There are 14 sheets in PDB entry 9FM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	42	first strand
Strand 2	A	47	53	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	148	156	anti-parallel
Strand 3	A	491	499	anti-parallel
Strand 4	B	455	458	parallel
Strand 5	B	433	437	parallel
Strand 6	B	268	273	parallel
Strand 7	B	305	312	parallel
Strand 8	B	409	415	parallel
Strand 9	B	390	391	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	186	190	parallel
Strand 3	A	159	163	parallel
Strand 4	A	238	242	parallel
Strand 5	A	261	265	parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	390	393	anti-parallel
Strand 3	A	409	415	parallel
Strand 4	A	308	312	parallel
Strand 5	A	270	273	parallel
Strand 6	A	433	437	parallel
Strand 7	A	455	458	parallel
Strand 8	B	491	499	parallel
Strand 9	B	148	156	anti-parallel
Strand 10	B	139	143	anti-parallel
Strand 11	C	139	143	anti-parallel
Strand 12	C	148	156	anti-parallel
Strand 13	C	491	499	anti-parallel
Strand 14	D	456	458	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	48	53	parallel
Strand 3	B	37	41	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	28	30	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	186	190	parallel
Strand 3	B	159	163	parallel
Strand 4	B	237	240	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	48	53	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	186	191	parallel
Strand 3	C	215	217	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	434	437	parallel
Strand 3	C	455	458	parallel
Strand 4	D	494	499	parallel
Strand 5	D	148	153	anti-parallel
Strand 6	D	143	145	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	312	first strand
Strand 2	C	409	415	parallel
Strand 3	C	390	393	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	186	188	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	436	437	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	311	first strand
Strand 2	D	413	414	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FM9