Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FMA entry

There is 1 chain in PDB entry 9FMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13TRP 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9FMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
32 45Right-handed alpha
Helix 3
AA3
A
56 76Right-handed alpha
Helix 4
AA4
A
84 97Right-handed alpha
Helix 5
AA5
A
98 106Right-handed alpha
Helix 6
AA6
A
107 109Right-handed 310
Helix 7
AA7
A
110 119Right-handed alpha
Helix 8
AA8
A
122 135Right-handed alpha
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
177 198Right-handed alpha
Helix 11
AB2
A
201 223Right-handed alpha
Helix 12
AB3
A
225 230Right-handed alpha
Helix 13
AB4
A
241 248Right-handed alpha
Helix 14
AB5
A
252 260Right-handed alpha
Helix 15
AB6
A
272 286Right-handed alpha
Helix 16
AB7
A
287 304Right-handed alpha
Helix 17
AB8
A
308 320Right-handed alpha
Helix 18
AB9
A
320 325Right-handed alpha
Helix 19
AC1
A
331 344Right-handed alpha
Helix 20
AC2
A
344 357Right-handed alpha
Helix 21
AC3
A
358 383Right-handed alpha
Helix 22
AC4
A
387 400Right-handed alpha
Helix 23
AC5
A
423 441Right-handed alpha
Helix 24
AC6
A
475 477Right-handed 310
Helix 25
AC7
A
487 494Right-handed alpha
Helix 26
AC8
A
494 506Right-handed alpha
Helix 27
AC9
A
510 514Right-handed 310
Helix 28
AD1
A
525 545Right-handed alpha
Helix 29
AD2
A
559 582Right-handed alpha
Helix 30
AD3
A
593 605Right-handed alpha
Helix 31
AD4
A
611 622Right-handed alpha
Helix 32
AD5
A
626 633Right-handed alpha
Helix 33
AD6
A
634 637Right-handed 310
Helix 34
AD7
A
638 646Right-handed alpha
Helix 35
AD8
A
656 660Right-handed 310
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There are 4 sheets in PDB entry 9FMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
608 610anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 149first strand
Strand 2
A
152 161anti-parallel
Strand 3
A
267 270parallel
Strand 4
A
238 240anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 406first strand
Strand 2
A
469 473parallel
Strand 3
A
462 464anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 549first strand
Strand 2
A
552 553anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il