Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FMB entry

There are 4 chains in PDB entry 9FMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 294	LEU 501
B	PRO 291	SER 500
C	THR 294	LEU 501
D	THR 294	ARG 499

There are 9 helices in PDB entry 9FMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	305	312	Right-handed alpha
Helix 2	AA2	A	367	372	Right-handed alpha
Helix 3	AA3	B	305	313	Right-handed alpha
Helix 4	AA4	B	325	329	Right-handed 310
Helix 5	AA5	B	367	373	Right-handed alpha
Helix 6	AA6	C	305	311	Right-handed alpha
Helix 7	AA7	C	367	372	Right-handed alpha
Helix 8	AA8	D	305	313	Right-handed alpha
Helix 9	AA9	D	367	373	Right-handed alpha

There are 21 sheets in PDB entry 9FMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	302	first strand
Strand 2	A	314	323	anti-parallel
Strand 3	A	357	366	anti-parallel
Strand 4	A	344	346	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	302	first strand
Strand 2	A	314	323	anti-parallel
Strand 3	A	357	366	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	335	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	385	392	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	410	first strand
Strand 2	A	419	428	anti-parallel
Strand 3	A	463	471	anti-parallel
Strand 4	A	447	453	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	444	first strand
Strand 2	A	433	439	anti-parallel
Strand 3	A	480	488	anti-parallel
Strand 4	A	493	501	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	314	323	anti-parallel
Strand 3	B	357	366	anti-parallel
Strand 4	B	344	346	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	314	323	anti-parallel
Strand 3	B	357	366	anti-parallel
Strand 4	B	350	351	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	335	first strand
Strand 2	B	376	381	anti-parallel
Strand 3	B	388	392	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	410	first strand
Strand 2	B	419	428	anti-parallel
Strand 3	B	463	471	anti-parallel
Strand 4	B	447	453	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	433	439	anti-parallel
Strand 3	B	482	488	anti-parallel
Strand 4	B	493	496	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	302	first strand
Strand 2	C	314	323	anti-parallel
Strand 3	C	357	366	anti-parallel
Strand 4	C	344	346	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	302	first strand
Strand 2	C	314	323	anti-parallel
Strand 3	C	357	366	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	335	first strand
Strand 2	C	376	381	anti-parallel
Strand 3	C	388	392	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	406	first strand
Strand 2	C	418	428	anti-parallel
Strand 3	C	463	472	anti-parallel
Strand 4	C	450	453	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	444	first strand
Strand 2	C	433	439	anti-parallel
Strand 3	C	481	488	anti-parallel
Strand 4	C	493	495	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	444	first strand
Strand 2	C	433	439	anti-parallel
Strand 3	C	481	488	anti-parallel
Strand 4	C	498	500	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	302	first strand
Strand 2	D	314	323	anti-parallel
Strand 3	D	357	366	anti-parallel
Strand 4	D	344	346	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	302	first strand
Strand 2	D	314	323	anti-parallel
Strand 3	D	357	366	anti-parallel
Strand 4	D	350	351	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	335	first strand
Strand 2	D	376	381	anti-parallel
Strand 3	D	388	392	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	412	first strand
Strand 2	D	418	428	anti-parallel
Strand 3	D	463	471	anti-parallel
Strand 4	D	447	450	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	444	first strand
Strand 2	D	433	439	anti-parallel
Strand 3	D	482	488	anti-parallel
Strand 4	D	493	498	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMB