Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FMN entry

There is 1 chain in PDB entry 9FMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 7	LYS 691

There are 36 helices in PDB entry 9FMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	143	147	Right-handed 310
Helix 2	AA2	A	199	204	Right-handed alpha
Helix 3	AA3	A	213	218	Right-handed alpha
Helix 4	AA4	A	327	339	Right-handed alpha
Helix 5	AA5	A	355	360	Right-handed alpha
Helix 6	AA6	A	453	462	Right-handed alpha
Helix 7	AA7	A	480	483	Right-handed 310
Helix 8	AA8	A	491	496	Right-handed 310
Helix 9	AA9	A	507	520	Right-handed alpha
Helix 10	AB1	A	532	537	Right-handed alpha
Helix 11	AB2	A	546	550	Right-handed alpha
Helix 12	AB3	A	552	577	Right-handed alpha
Helix 13	AB4	A	580	582	Right-handed 310
Helix 14	AB5	A	600	604	Right-handed 310
Helix 15	AB6	A	642	652	Right-handed alpha
Helix 16	AB7	A	653	655	Right-handed 310
Helix 17	AB8	A	663	668	Right-handed alpha
Helix 18	AB9	A	688	692	Right-handed 310
Helix 19	AC1	B	143	147	Right-handed 310
Helix 20	AC2	B	199	204	Right-handed alpha
Helix 21	AC3	B	213	218	Right-handed alpha
Helix 22	AC4	B	327	339	Right-handed alpha
Helix 23	AC5	B	355	360	Right-handed alpha
Helix 24	AC6	B	453	463	Right-handed alpha
Helix 25	AC7	B	480	483	Right-handed 310
Helix 26	AC8	B	491	496	Right-handed 310
Helix 27	AC9	B	507	520	Right-handed alpha
Helix 28	AD1	B	532	539	Right-handed alpha
Helix 29	AD2	B	546	552	Right-handed alpha
Helix 30	AD3	B	552	578	Right-handed alpha
Helix 31	AD4	B	580	582	Right-handed 310
Helix 32	AD5	B	600	604	Right-handed 310
Helix 33	AD6	B	642	652	Right-handed alpha
Helix 34	AD7	B	653	655	Right-handed 310
Helix 35	AD8	B	663	669	Right-handed alpha
Helix 36	AD9	B	688	692	Right-handed 310

There are 26 sheets in PDB entry 9FMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	33	36	parallel
Strand 3	A	82	87	anti-parallel
Strand 4	A	56	60	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	28	first strand
Strand 2	A	111	128	parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	47	52	anti-parallel
Strand 5	A	75	76	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	28	first strand
Strand 2	A	111	128	parallel
Strand 3	A	190	197	anti-parallel
Strand 4	A	254	261	anti-parallel
Strand 5	A	220	225	anti-parallel
Strand 6	A	232	237	anti-parallel
Strand 7	A	179	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	291	302	parallel
Strand 3	A	272	281	anti-parallel
Strand 4	A	207	211	anti-parallel
Strand 5	A	243	247	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	361	368	anti-parallel
Strand 3	A	371	378	anti-parallel
Strand 4	A	399	402	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	314	320	parallel
Strand 3	A	677	682	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	A	469	472	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	427	first strand
Strand 2	A	430	432	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	489	first strand
Strand 2	A	500	506	anti-parallel
Strand 3	A	584	588	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	544	545	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	594	first strand
Strand 2	A	609	612	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	623	first strand
Strand 2	A	626	630	anti-parallel
Strand 3	A	657	661	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	637	first strand
Strand 2	A	640	641	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	33	36	parallel
Strand 3	B	82	87	anti-parallel
Strand 4	B	56	60	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	28	first strand
Strand 2	B	111	128	parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	47	52	anti-parallel
Strand 5	B	75	76	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	28	first strand
Strand 2	B	111	128	parallel
Strand 3	B	190	197	anti-parallel
Strand 4	B	252	261	anti-parallel
Strand 5	B	220	225	anti-parallel
Strand 6	B	232	237	anti-parallel
Strand 7	B	180	181	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	291	302	parallel
Strand 3	B	272	281	anti-parallel
Strand 4	B	206	211	anti-parallel
Strand 5	B	243	247	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	361	367	anti-parallel
Strand 3	B	372	378	anti-parallel
Strand 4	B	399	402	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	314	320	parallel
Strand 3	B	677	682	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	437	441	anti-parallel
Strand 3	B	469	472	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	427	first strand
Strand 2	B	430	432	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	489	first strand
Strand 2	B	500	506	anti-parallel
Strand 3	B	584	588	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	544	545	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	594	first strand
Strand 2	B	609	612	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	623	first strand
Strand 2	B	626	630	anti-parallel
Strand 3	B	657	661	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMN